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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCAGGAGGCTGGGGGGGTTTGGGTTAGTGGAGCTGTGGTTGCGGTCTCTCTTAATGCTGAATTTTCTGTAGTCGCAAGGAATAGTGTGACGGATACGAGgtgggtggcgatttcgatgtggttttgaggtttaaggaggtgcgggtggttgttggttgttggttgtggagtttttccggggatggactgtgtttggatt...

Basic information

species Physcomitrella patens
transcript PP1S509_13V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67569566|gb|BJ942390.1|BJ942390
EST:     CTTAATGCTGAATTTTCTGTAGTCGCAAGGAATAGTGTGACGGATACGAG                         CTTCGTATTTGGAGTGCGTGAAGGCGGCCGCAGAAGTGCTCGGACTACCAA
genomic: CTTAATGCTGAATTTTCTGTAGTCGCAAGGAATAGTGTGACGGATACGAGgtgggtggcg ... gtaaagctagCTTCGTATTTGGAGTGCGTGAAGGCGGCCGCAGAAGTGCTCGGACTACCAA
EST: gi|208344809|gb|DC912643.1|DC912643
EST:     CTTAATGCTGAATTTTCTGTAGTCGCAAGGAATAGTGTGACGGATACGAG                         CTTCGTATTTGGAGTGCGTGAAGGCGGCCGCAGAAGTGCTCGGACTACCAA
genomic: CTTAATGCTGAATTTTCTGTAGTCGCAAGGAATAGTGTGACGGATACGAGgtgggtggcg ... gtaaagctagCTTCGTATTTGGAGTGCGTGAAGGCGGCCGCAGAAGTGCTCGGACTACCAA
EST: gi|18365899|gb|BJ197977.1|BJ197977
EST:     CTTAATGCTGAATTTTCTGTAGTCGCAAGGAATAGTGTGACGGATACGAG                         CTTCGTATTTGGAGTGCGTGAAGGCGGCCGCAGAAGTGCTCGGACTACCAA
genomic: CTTAATGCTGAATTTTCTGTAGTCGCAAGGAATAGTGTGACGGATACGAGgtgggtggcg ... gtaaagctagCTTCGTATTTGGAGTGCGTGAAGGCGGCCGCAGAAGTGCTCGGACTACCAA
EST: gi|67710202|gb|BJ965888.1|BJ965888
EST:     CTTAATGCTGAATTTTCTGTAGTCGCAAGGAATAGTGTGACGGATACGAG                         CTTCGTATTTGGAGTGCGTGAAGGCGGCCGCAGAAGTGCTCGGACTACCAA
genomic: CTTAATGCTGAATTTTCTGTAGTCGCAAGGAATAGTGTGACGGATACGAGgtgggtggcg ... gtaaagctagCTTCGTATTTGGAGTGCGTGAAGGCGGCCGCAGAAGTGCTCGGACTACCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCAGGAGGCTGGGGGGGTTTGGGTTAGTGGAGCTGTGGTTGCGGTCTCTCTTAATGCTGAATTTTCTGTAGTCGCAAGGAATAGTGTGACGGATACGAGgtgggtggcgatttcgatgtggttttgaggtttaaggaggtgcgggtggttgttggttgttggttgtggagtttttccggggatggactgtgtttggatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA