1 5' 3' | 2 5' 3' | 3 5' 3' |
TTGCGACACCAGAGTTCACGCCGCTAATAAACTTGCCAACAAGCATGTCCGGGTTCCTCTTGTTGGGCAGCTTGAGCCACCCCGCTGTGACATATGCCAGgtccgtaatgattgtttatgtcgctgaaatctgccgttgaaaagcaatctgcgcagttttcactagcatcaagtttcttctccttgttgactcagaatgt...
species | Physcomitrella patens |
transcript | PP1S509_13V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGGTTCCTCTTGTTGGGCAGCTTGAGCCACCCCGCTGTGACATATGCCAG GATAAAGCAGGTTTCTTCTTCTGCTTGGAAGACAGGGCCCTTCTCTGTCGAEST: gi|208344809|gb|DC912643.1|DC912643
genomic: GGGTTCCTCTTGTTGGGCAGCTTGAGCCACCCCGCTGTGACATATGCCAGgtccgtaatg ... tgtttattagGATAAAGCAGGTTTCTTCTTCTGCTTGGAAGACAGGGCCCTTCTCTGTCGA
EST: GGGTTCCTCTTGTTGGGCAGCTTGAGCCACCCCGCTGTGACATATGCCAG GATAAAGCAGGTTTCTTCTTCTGCTTGGAAGACAGGGCCCTTCTCTGTCGAEST: gi|18365899|gb|BJ197977.1|BJ197977
genomic: GGGTTCCTCTTGTTGGGCAGCTTGAGCCACCCCGCTGTGACATATGCCAGgtccgtaatg ... tgtttattagGATAAAGCAGGTTTCTTCTTCTGCTTGGAAGACAGGGCCCTTCTCTGTCGA
EST: GGGTTCCTCTTGTTGGGCAGCTTGAGCCACCCCGCTGTGACATATGCCAG GATAAAGCAGGTTTCTTCTTCTGCTTGGAAGACAGGGCCCTTCTCTGTCGAEST: gi|67710202|gb|BJ965888.1|BJ965888
genomic: GGGTTCCTCTTGTTGGGCAGCTTGAGCCACCCCGCTGTGACATATGCCAGgtccgtaatg ... tgtttattagGATAAAGCAGGTTTCTTCTTCTGCTTGGAAGACAGGGCCCTTCTCTGTCGA
EST: GGGTTCCTCTTGTTGGGCAGCTTGAGCCACCCCGCTGTGACATATGCCAG GATAAAGCAGGTTTCTTCTTCTGCTTGGAAGACAGGGCCCTTCTCTGTCGA
genomic: GGGTTCCTCTTGTTGGGCAGCTTGAGCCACCCCGCTGTGACATATGCCAGgtccgtaatg ... tgtttattagGATAAAGCAGGTTTCTTCTTCTGCTTGGAAGACAGGGCCCTTCTCTGTCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCGACACCAGAGTTCACGCCGCTAATAAACTTGCCAACAAGCATGTCCGGGTTCCTCTTGTTGGGCAGCTTGAGCCACCCCGCTGTGACATATGCCAGgtccgtaatgattgtttatgtcgctgaaatctgccgttgaaaagcaatctgcgcagttttcactagcatcaagtttcttctccttgttgactcagaatgt
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