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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aggaggtttgtttttttgttggttttatagagatcaaggtgtttggctggtcttttggaaggatctgtctaactattcaatgttattctggtaaagctagCTTCGTATTTGGAGTGCGTGAAGGCGGCCGCAGAAGTGCTCGGACTACCAAATTGCCCGGCGTCGCGGTGTGAAGTGAATGCGGTCGTTTTGATAATTCG

Basic information

species Physcomitrella patens
transcript PP1S509_13V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67569566|gb|BJ942390.1|BJ942390
EST:     CTTAATGCTGAATTTTCTGTAGTCGCAAGGAATAGTGTGACGGATACGAG                         CTTCGTATTTGGAGTGCGTGAAGGCGGCCGCAGAAGTGCTCGGACTACCAA
genomic: CTTAATGCTGAATTTTCTGTAGTCGCAAGGAATAGTGTGACGGATACGAGgtgggtggcg ... gtaaagctagCTTCGTATTTGGAGTGCGTGAAGGCGGCCGCAGAAGTGCTCGGACTACCAA
EST: gi|208344809|gb|DC912643.1|DC912643
EST:     CTTAATGCTGAATTTTCTGTAGTCGCAAGGAATAGTGTGACGGATACGAG                         CTTCGTATTTGGAGTGCGTGAAGGCGGCCGCAGAAGTGCTCGGACTACCAA
genomic: CTTAATGCTGAATTTTCTGTAGTCGCAAGGAATAGTGTGACGGATACGAGgtgggtggcg ... gtaaagctagCTTCGTATTTGGAGTGCGTGAAGGCGGCCGCAGAAGTGCTCGGACTACCAA
EST: gi|18365899|gb|BJ197977.1|BJ197977
EST:     CTTAATGCTGAATTTTCTGTAGTCGCAAGGAATAGTGTGACGGATACGAG                         CTTCGTATTTGGAGTGCGTGAAGGCGGCCGCAGAAGTGCTCGGACTACCAA
genomic: CTTAATGCTGAATTTTCTGTAGTCGCAAGGAATAGTGTGACGGATACGAGgtgggtggcg ... gtaaagctagCTTCGTATTTGGAGTGCGTGAAGGCGGCCGCAGAAGTGCTCGGACTACCAA
EST: gi|67710202|gb|BJ965888.1|BJ965888
EST:     CTTAATGCTGAATTTTCTGTAGTCGCAAGGAATAGTGTGACGGATACGAG                         CTTCGTATTTGGAGTGCGTGAAGGCGGCCGCAGAAGTGCTCGGACTACCAA
genomic: CTTAATGCTGAATTTTCTGTAGTCGCAAGGAATAGTGTGACGGATACGAGgtgggtggcg ... gtaaagctagCTTCGTATTTGGAGTGCGTGAAGGCGGCCGCAGAAGTGCTCGGACTACCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctggtcttttggaaggatctgtctaactattcaatgttattctggtaaagctagCTTCGTATTTGGAGTGCGTGAAGGCGGCCGCAGAAGTGCTCGGACTACCAAATTGCCCGGCGTCGCGGTGTGAAGTGAATGCGGTCGTTTTGATAATTCG
                     gtctaac  putative branch site (score: 2)
                            tattcaatgttatt  TA-rich tract