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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaacagctcaaggaggggacttcaatttggcttgaacttcgttaccgtacgatgcgtctcagtttaattcacgacgttacgtaatgtcaaccttctttttgtctgaggtaaggagcttacctttcgtatgacgtctgcacagATTGATGCATTCTTCAAATACTATCCAAAGAGACTTGGGCAAGTGCTGTTCGTAGATGCGCCGTTTATATTCCAACCAGGGTGGGCTATGATTAAGCCAT

Basic information

species Physcomitrella patens
transcript PP1S4_80V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208345072|gb|DC925426.1|DC925426
EST:     TGAGAGGCTTCAAACAAAAGAATGGAGATTTGAAATTCACTAAGTTTCTG                         ATTGATGCATTCTTCAAATACTATCCAAAGAGACTTGGGCAAGTGCTGTTC
genomic: TGAGAGGCTTCAAACAAAAGAATGGAGATTTGAAATTCACTAAGTTTCTGgtaagaacag ... gtctgcacagATTGATGCATTCTTCAAATACTATCCAAAGAGACTTGGGCAAGTGCTGTTC
EST: gi|208379403|gb|DC919019.1|DC919019
EST:     TGAGAGGCTTCAAACAAAAGAATGGAGATTTGAAATTCACTAAGTTTCTG                         ATTGATGCATTCTTCAAATACTATCCAAAGAGACTTGGGCAAGTGCTGTTC
genomic: TGAGAGGCTTCAAACAAAAGAATGGAGATTTGAAATTCACTAAGTTTCTGgtaagaacag ... gtctgcacagATTGATGCATTCTTCAAATACTATCCAAAGAGACTTGGGCAAGTGCTGTTC
EST: gi|162238292|gb|FC414534.1|FC414534
EST:     TGAGAGGCTTCAAACAAAAGAATGGAGATTTGAAATTCACTAAGTTTCTG                         ATTGATGCATTCTTCAAATACTATCCAAAGAGACTTGGGCAAGTGCTGTTC
genomic: TGAGAGGCTTCAAACAAAAGAATGGAGATTTGAAATTCACTAAGTTTCTGgtaagaacag ... gtctgcacagATTGATGCATTCTTCAAATACTATCCAAAGAGACTTGGGCAAGTGCTGTTC
EST: gi|208399395|gb|DC924825.1|DC924825
EST:     TGAGAGGCTTCAAACAAAAGAATGGAGATTTGAAATTCACTAAGTTTCTG                         ATTGATGCATTCTTCAAATACTATCCAAAGAGACTTGGGCAAGTGCTGTTC
genomic: TGAGAGGCTTCAAACAAAAGAATGGAGATTTGAAATTCACTAAGTTTCTGgtaagaacag ... gtctgcacagATTGATGCATTCTTCAAATACTATCCAAAGAGACTTGGGCAAGTGCTGTTC
EST: gi|7047315|gb|AW477209.1|AW477209
EST:     TGAGAGGCTTCAAACAAAAGAATGCAGATTTGAAATTCACTAAGTTTCTG                         ATTGATGCATTCTTCAAATACTATCCAAAGAGACTTGGGCAAGTGCTGTTC
genomic: TGAGAGGCTTCAAACAAAAGAATGGAGATTTGAAATTCACTAAGTTTCTGgtaagaacag ... gtctgcacagATTGATGCATTCTTCAAATACTATCCAAAGAGACTTGGGCAAGTGCTGTTC
EST: gi|162279529|gb|FC455320.1|FC455320
EST:     TGAGAGGCTTCAAACAAAAGAATGGAGATTTGAAATTCACTAAGTTTCTG                         ATTGATGCATTCTTCAAATACTATCCAAAGAGACTTGGGCAAGTGCTGTTC
genomic: TGAGAGGCTTCAAACAAAAGAATGGAGATTTGAAATTCACTAAGTTTCTGgtaagaacag ... gtctgcacagATTGATGCATTCTTCAAATACTATCCAAAGAGACTTGGGCAAGTGCTGTTC
EST: gi|37838301|gb|BJ596309.1|BJ596309
EST:     TGAGAGGCTTCAAACAAAAGAATGGAGATTTGAAATTCACTAAGTTTCTG                         ATTGATGCATTCTTCAAATACTATCCAAAGAGACTTGGGCAAGTGCTGTTC
genomic: TGAGAGGCTTCAAACAAAAGAATGGAGATTTGAAATTCACTAAGTTTCTGgtaagaacag ... gtctgcacagATTGATGCATTCTTCAAATACTATCCAAAGAGACTTGGGCAAGTGCTGTTC
EST: gi|162254025|gb|FC429341.1|FC429341
EST:     TGAGAGGCTTCAAACAAAAGAATGGAGATTTGAAATTCACTAAGTTTCTG                         ATTGATGCATTCTTCAAATACTATCCAAAGAGACTTGGGCAAGTGCTGTTC
genomic: TGAGAGGCTTCAAACAAAAGAATGGAGATTTGAAATTCACTAAGTTTCTGgtaagaacag ... gtctgcacagATTGATGCATTCTTCAAATACTATCCAAAGAGACTTGGGCAAGTGCTGTTC
EST: gi|7207502|gb|AW561502.1|AW561502
EST:     TGAGAGGCTTCAAACAAAAGAATGGAGATTTGAAATTCACTAAGTTTCTG                         ATTGATGCATTCTTCAAATACTATCCAAAGAGACTTGGGCAAGTGCTGTTC
genomic: TGAGAGGCTTCAAACAAAAGAATGGAGATTTGAAATTCACTAAGTTTCTGgtaagaacag ... gtctgcacagATTGATGCATTCTTCAAATACTATCCAAAGAGACTTGGGCAAGTGCTGTTC
EST: gi|37841164|gb|BJ599172.1|BJ599172
EST:     TGAGAGGCTTCAAACAAAAGAATGGAGATTTGAAATTCACTAAGTTTCTG                         ATTGATGCATTCTTCAAATACTATCCAAAGAGACTTGGGCAAGTGCTGTTC
genomic: TGAGAGGCTTCAAACAAAAGAATGGAGATTTGAAATTCACTAAGTTTCTGgtaagaacag ... gtctgcacagATTGATGCATTCTTCAAATACTATCCAAAGAGACTTGGGCAAGTGCTGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaccttctttttgtctgaggtaaggagcttacctttcgtatgacgtctgcacagATTGATGCATTCTTCAAATACTATCCAAAGAGACTTGGGCAAGTGCTGTTCGTAGATGCGCCGTTTATATTCCAACCAGGGTGGGCTATGATTAAGCCAT
                          agcttac  putative branch site (score: 3)
     ttcttttt  TA-rich tract