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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGAACGGAGCAGAGCCGGTTTCTGTGCTTGTGCCGGTCTCAACCTCGTTTTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGGgtaagtggtaagcataccaagcttcctttggcctttgtggattgagggtgattttacggaagctggatgtagataccgagggacctttgtcaatgcgggt...

Basic information

species Physcomitrella patens
transcript PP1S4_80V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100432131|gb|BY960350.1|BY960350
EST:     TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAGATTGGCATTCGGCAGGG                         ACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAG
genomic: TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGGgtaagtggta ... atatctgcagACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAG
EST: gi|18360586|gb|BJ192649.1|BJ192649
EST:     TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGG                         ACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAG
genomic: TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGGgtaagtggta ... atatctgcagACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAG
EST: gi|162279530|gb|FC455321.1|FC455321
EST:     TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGGGTAAGTG                   
genomic: TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCA---G---G-Ggtaagtggta ... atat
EST: gi|208379109|gb|DC911634.1|DC911634
EST:     TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGG                         ACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAG
genomic: TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGGgtaagtggta ... atatctgcagACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAG
EST: gi|18364000|gb|BJ196073.1|BJ196073
EST:     TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGG                         ACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAG
genomic: TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGGgtaagtggta ... atatctgcagACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAG
EST: gi|208344682|gb|DC905131.1|DC905131
EST:     TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGG                         ACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAG
genomic: TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGGgtaagtggta ... atatctgcagACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAG
EST: gi|208376190|gb|DC911014.1|DC911014
EST:     TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGG                         ACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAG
genomic: TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGGgtaagtggta ... atatctgcagACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAG
EST: gi|162258991|gb|FC435934.1|FC435934
EST:     TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGG                         ACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAG
genomic: TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGGgtaagtggta ... atatctgcagACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAG