Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttcctgcccatctcttatcgttaaatatataggtataccaagaaagaaaactgagcgtgaataatttaggtgttatttaatacatatggactgagcacaatctttgcgtgttgatagattgatagcttgagaaactcaagaattttaagtgattgataacaattcactgactcaacaatgtatgattgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGGTCCTTTGACCCTGCTCGTCAAGACCGATTTATTAAGCGTATTGTTGAGC

Basic information

species Physcomitrella patens
transcript PP1S422_8V6.3
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S422_8V6.3 (Physcomitrella patens), 3'ss of exon 6
lower sequence: LOC_Os06g51150.1 (Oryza sativa), 3'ss of exon 5
gtaattttcctgcccatctcttatcgttaaatatataggtataccaagaaagaaaactgagcgtgaataatttaggtgttatttaatacatatggactgagcacaatctttgcgtgttgatagat-tgatagcttgagaaactcaagaattttaagtgattgata-acaattcactgactcaacaatgtatgattgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGGTCCTTTGACCCTGCTCGTCAAGACCGATTTATTAAGCGTATTGTTGAGC
||   |  | ||  |  ||   |    |   |     | ||      ||        |   |  |    |||  |    |||||  |  || |||| || |   ||    |  || || |||||| || || | ||  ||   |||  |    | |   |||| | |   ||  ||| |||     | | |       ||||   || |||  |||||| ||||| |||||||| ||||| ||||| | |||||| |||||||||||  |                                
gtgtgtaacttggtccacttgaactcct---tgcgctgttaccttgtgagcatggttttgtcccgctacattaggagactatttgctg-atttggaatgcgatgaaa---tatgtatt-atagatgtggtaccctggaaagtacaatgaccacatgcatttgacacaatgttttctgcctctcttttttgttggaaatgcagTGTGTCATTGACAAGGAGAACAATTTCCAACAGGCTGGTGAGAGATACCGGTCATTTGACCCTGCCAG--------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162159839|gb|FC335884.1|FC335884
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37853472|gb|BJ611480.1|BJ611480
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162180480|gb|FC356122.1|FC356122
EST:     CGGAACGAGTCTCAATTTTTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162168186|gb|FC344916.1|FC344916
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37853543|gb|BJ611551.1|BJ611551
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37846039|gb|BJ604047.1|BJ604047
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37850687|gb|BJ608695.1|BJ608695
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37836143|gb|BJ594151.1|BJ594151
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162197735|gb|FC374985.1|FC374985
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162154074|gb|FC330309.1|FC330309
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162161406|gb|FC337612.1|FC337612
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|208388749|gb|DC953483.1|DC953483
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162264608|gb|FC441203.1|FC441203
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162217909|gb|FC393905.1|FC393905
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162240134|gb|FC418261.1|FC418261
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162168202|gb|FC344932.1|FC344932
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162210932|gb|FC387030.1|FC387030
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37832780|gb|BJ590792.1|BJ590792
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162176217|gb|FC352674.1|FC352674
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|67569493|gb|BJ942317.1|BJ942317
EST:     TTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: TTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162178514|gb|FC354966.1|FC354966
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162153219|gb|FC329001.1|FC329001
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|18337523|gb|BJ169547.1|BJ169547
EST:     ACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: ACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162263557|gb|FC440093.1|FC440093
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162210236|gb|FC386422.1|FC386422
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162263558|gb|FC440094.1|FC440094
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37836958|gb|BJ594966.1|BJ594966
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162161405|gb|FC337611.1|FC337611
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTCCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162212921|gb|FC388929.1|FC388929
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162263890|gb|FC439185.1|FC439185
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|18336643|gb|BJ168666.1|BJ168666
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37850171|gb|BJ608179.1|BJ608179
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|208383013|gb|DC927763.1|DC927763
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37850798|gb|BJ608806.1|BJ608806
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162223444|gb|FC399074.1|FC399074
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162232949|gb|FC407550.1|FC407550
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162211184|gb|FC386896.1|FC386896
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162210250|gb|FC386423.1|FC386423
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162185868|gb|FC360968.1|FC360968
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162173037|gb|FC349169.1|FC349169
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162174037|gb|FC350552.1|FC350552
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162170489|gb|FC347648.1|FC347648
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162158123|gb|FC333918.1|FC333918
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162200568|gb|FC376763.1|FC376763
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162179285|gb|FC356234.1|FC356234
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162267692|gb|FC443474.1|FC443474
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|67579071|gb|BJ951222.1|BJ951222
EST:     TCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: TCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|208357025|gb|DC922305.1|DC922305
EST:     CGGAACGAGTCCCAATTTNTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162225009|gb|FC401425.1|FC401425
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|67693133|gb|BJ953366.1|BJ953366
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162185083|gb|FC362217.1|FC362217
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37839954|gb|BJ597962.1|BJ597962
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162178515|gb|FC354967.1|FC354967
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|100393831|gb|BY953524.1|BY953524
EST:     GGAACGAGTCCCATTTTCTCAGTCAAGACTTGGCAG-AGTGAGAGAGAAG                         GC-GTTTATTCCAAAGAAAAACAACTTCCAACAAGCTGGAGAGAG
genomic: GGAACGAGTCCCAATTTCTCAGTCAAGACTTG-CAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTT-ATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAG
EST: gi|162212155|gb|FC388265.1|FC388265
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|67697421|gb|BJ957654.1|BJ957654
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162206607|gb|FC382365.1|FC382365
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162154075|gb|FC330310.1|FC330310
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162206608|gb|FC382366.1|FC382366
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|67692760|gb|BJ952993.1|BJ952993
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37844461|gb|BJ602469.1|BJ602469
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37825680|gb|BJ583746.1|BJ583746
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|208396655|gb|DC920363.1|DC920363
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162153365|gb|FC329875.1|FC329875
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|19788686|gb|BQ040857.1|BQ040857
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|208382629|gb|DC919811.1|DC919811
EST:     CGGAACGAGTCCCAATTTNTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162277022|gb|FC453744.1|FC453744
EST:     CGGAACGAGTCCCAATTTTTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37849287|gb|BJ607295.1|BJ607295
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|67697189|gb|BJ957422.1|BJ957422
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162223443|gb|FC399073.1|FC399073
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162200016|gb|FC376478.1|FC376478
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162274811|gb|FC450838.1|FC450838
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162175798|gb|FC352100.1|FC352100
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37836690|gb|BJ594698.1|BJ594698
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162162216|gb|FC337998.1|FC337998
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162225470|gb|FC401222.1|FC401222
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattttaagtgattgataacaattcactgactcaacaatgtatgattgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGGTCCTTTGACCCTGCTCGTCAAGACCGATTTATTAAGCGTATTGTTGAGC
                         cactgac  putative branch site (score: 2)
                ataacaatt  TA-rich tract