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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctactttatttacaatttatttcatcgactatcctagctggtggtgtttttgtggagtaatgttactcctcaattgaggattgtacttttctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAGAATGAGCAGCTGGCTTTCTGCCCTGGTGTCATTGTTCCTGGTATCTACT

Basic information

species Physcomitrella patens
transcript PP1S422_8V6.3
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162159839|gb|FC335884.1|FC335884
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|37853472|gb|BJ611480.1|BJ611480
EST:     AGGATAGGTTCCNTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: AGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162168186|gb|FC344916.1|FC344916
EST:     AAGATTTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: AAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|37853543|gb|BJ611551.1|BJ611551
EST:     CTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGNA
genomic: CTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCG-A
EST: gi|208353793|gb|DC906481.1|DC906481
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|37850687|gb|BJ608695.1|BJ608695
EST:     TGAGGATAGGTTCCNTCTTCAG                         CCTGTAGGAAGGATGGTCNTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: TGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|37836143|gb|BJ594151.1|BJ594151
EST:     ATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162197735|gb|FC374985.1|FC374985
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162225471|gb|FC401223.1|FC401223
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162161406|gb|FC337612.1|FC337612
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|208388749|gb|DC953483.1|DC953483
EST:     CCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: CCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162240134|gb|FC418261.1|FC418261
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162168202|gb|FC344932.1|FC344932
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162210932|gb|FC387030.1|FC387030
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|37832780|gb|BJ590792.1|BJ590792
EST:     CCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGGA
genomic: CCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCC-GA
EST: gi|162178514|gb|FC354966.1|FC354966
EST:     GATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACA-TGNATAACTTCTTTGCCGA
genomic: GATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTG-ATAACTTCTTTGCCGA
EST: gi|162153220|gb|FC329002.1|FC329002
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTG
EST: gi|37836958|gb|BJ594966.1|BJ594966
EST:     TGAGGATAGGTTCCNTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: TGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162161405|gb|FC337611.1|FC337611
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTTCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162212921|gb|FC388929.1|FC388929
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162263890|gb|FC439185.1|FC439185
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|37850171|gb|BJ608179.1|BJ608179
EST:     TGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGGA
genomic: TGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCC-GA
EST: gi|208383013|gb|DC927763.1|DC927763
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162223444|gb|FC399074.1|FC399074
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162232949|gb|FC407550.1|FC407550
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|100444734|gb|BY982563.1|BY982563
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162210250|gb|FC386423.1|FC386423
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162173037|gb|FC349169.1|FC349169
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162174037|gb|FC350552.1|FC350552
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162170489|gb|FC347648.1|FC347648
EST:     TGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: TGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162158123|gb|FC333918.1|FC333918
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162200568|gb|FC376763.1|FC376763
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162179285|gb|FC356234.1|FC356234
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162267692|gb|FC443474.1|FC443474
EST:     AGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: AGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162185083|gb|FC362217.1|FC362217
EST:     ATCCTCTCGATGACACCAAGATCTGGCNTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162178515|gb|FC354967.1|FC354967
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|100393831|gb|BY953524.1|BY953524
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|67697421|gb|BJ957654.1|BJ957654
EST:     GAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: GAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162154075|gb|FC330310.1|FC330310
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162221788|gb|FC398355.1|FC398355
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162175799|gb|FC352101.1|FC352101
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|67507796|gb|BJ940673.1|BJ940673
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|208396655|gb|DC920363.1|DC920363
EST:     CGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: CGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162153365|gb|FC329875.1|FC329875
EST:     ATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162185084|gb|FC362218.1|FC362218
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|208382629|gb|DC919811.1|DC919811
EST:     TGAGGATAGGTTCCCTTTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACANTGATAACTTCTTTGCCGAG
genomic: TGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|67697189|gb|BJ957422.1|BJ957422
EST:     CCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: CCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162223443|gb|FC399073.1|FC399073
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162200016|gb|FC376478.1|FC376478
EST:     ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATCCTCTCGATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
EST: gi|162175798|gb|FC352100.1|FC352100
EST:     ATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAG                         CCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG
genomic: ATGACACCAAGATCTGGCCTGAGGATAGGTTCCCTCTTCAGgtatgcataa ... ctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttttgtggagtaatgttactcctcaattgaggattgtacttttctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAGAATGAGCAGCTGGCTTTCTGCCCTGGTGTCATTGTTCCTGGTATCTACT
                                      tacttttct  CT-rich tract
            taatgtta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctactttatttacaatttatttcatcgactatcctagctggtggtgtttttgtggagtaatgttactcctcaattgaggattgtacttttctgtgtgcagCCTGTAGGAAGGATGGTCCTGAACAGGAACATTGATAACTTCTTTGCCGAGAATGAGCAGCTGGCTTTCTGCCCTGGTGTCATTGTTCCTGGTATCTACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG