1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gaatgtagattctgtcctcaaacaggatttttatgcctgcgacatgccaggcaactgatcgctcacctaatttctcctttctggaatggttaatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGATCACCAGTATGGAACAACAATAACTCCTTGACAGTTGGCCCAAGAGGAC
species | Physcomitrella patens |
transcript | PP1S422_8V6.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGAEST: gi|208383448|gb|DC911200.1|DC911200
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGAEST: gi|162240135|gb|FC418262.1|FC418262
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGAEST: gi|100435548|gb|BY960968.1|BY960968
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGAEST: gi|100404321|gb|BY973518.1|BY973518
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGAEST: gi|162180481|gb|FC356123.1|FC356123
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCATGGAEST: gi|162232950|gb|FC407551.1|FC407551
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGAEST: gi|100358243|gb|BY965545.1|BY965545
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGAEST: gi|162170490|gb|FC347649.1|FC347649
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGAEST: gi|18355835|gb|BJ187894.1|BJ187894
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGAEST: gi|162267693|gb|FC443475.1|FC443475
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGAEST: gi|100376391|gb|BY986144.1|BY986144
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGAEST: gi|18357595|gb|BJ189654.1|BJ189654
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGAEST: gi|162264609|gb|FC441204.1|FC441204
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGAEST: gi|162158124|gb|FC333919.1|FC333919
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGAEST: gi|67569863|gb|BJ942687.1|BJ942687
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGAEST: gi|162179286|gb|FC356235.1|FC356235
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGAEST: gi|162157350|gb|FC333465.1|FC333465
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGAEST: gi|162200569|gb|FC376764.1|FC376764
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
gccaggcaactgatcgctcacctaatttctcctttctggaatggttaatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGATCACCAGTATGGAACAACAATAACTCCTTGACAGTTGGCCCAAGAGGAC
ttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatgtagattctgtcctcaaacaggatttttatgcctgcgacatgccaggcaactgatcgctcacctaatttctcctttctggaatggttaatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGATCACCAGTATGGAACAACAATAACTCCTTGACAGTTGGCCCAAGAGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA