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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACCCACGTGGGTTTGCCGTCAAATTTTACACTCGGGAGGGTAACTTTGACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttctacgcttattctacgtgccttgtggtacatgagtttgcacaagttagctgtaatatttacagaatccttctggtcagatatttgcgatgaag...

Basic information

species Physcomitrella patens
transcript PP1S422_8V6.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100384130|gb|BY950516.1|BY950516
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|208383448|gb|DC911200.1|DC911200
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162240135|gb|FC418262.1|FC418262
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162225471|gb|FC401223.1|FC401223
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100435548|gb|BY960968.1|BY960968
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100404321|gb|BY973518.1|BY973518
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162180481|gb|FC356123.1|FC356123
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCGAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162232950|gb|FC407551.1|FC407551
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162153220|gb|FC329002.1|FC329002
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100358243|gb|BY965545.1|BY965545
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162170490|gb|FC347649.1|FC347649
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100444734|gb|BY982563.1|BY982563
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162267693|gb|FC443475.1|FC443475
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100376391|gb|BY986144.1|BY986144
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|18357595|gb|BJ189654.1|BJ189654
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGC
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGC
EST: gi|162264609|gb|FC441204.1|FC441204
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162158124|gb|FC333919.1|FC333919
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|67569863|gb|BJ942687.1|BJ942687
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162179286|gb|FC356235.1|FC356235
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162221788|gb|FC398355.1|FC398355
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162175799|gb|FC352101.1|FC352101
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100441089|gb|BY980710.1|BY980710
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162157350|gb|FC333465.1|FC333465
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162162217|gb|FC337999.1|FC337999
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162185084|gb|FC362218.1|FC362218
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162185869|gb|FC360969.1|FC360969
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162200569|gb|FC376764.1|FC376764
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG