1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacgtctggatataataattggttccagctgcgtcggtcataacagagtttttgcgcgtgcagatgctgagtttacccttgaagatttaatactgttcttggtgcaaccgtgctcacaatgatgtttcaacgtgcagTTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCTACATGCGGTGTGAAGAATCTGTTGGACGATGAGGCTGTGCTAGTCGGTG
species | Physcomitrella patens |
transcript | PP1S422_8V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAG TTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCTEST: gi|208353793|gb|DC906481.1|DC906481
genomic: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAGgtacgtctgg ... caacgtgcagTTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCT
EST: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAG TTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCTEST: gi|100420776|gb|BY993500.1|BY993500
genomic: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAGgtacgtctgg ... caacgtgcagTTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCT
EST: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAG TTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCTEST: gi|162240135|gb|FC418262.1|FC418262
genomic: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAGgtacgtctgg ... caacgtgcagTTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCT
EST: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAG TTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCTEST: gi|162225471|gb|FC401223.1|FC401223
genomic: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAGgtacgtctgg ... caacgtgcagTTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCT
EST: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAG TTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCTEST: gi|100405955|gb|BY991467.1|BY991467
genomic: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAGgtacgtctgg ... caacgtgcagTTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCT
EST: TCCTGCCGACTACCGTCACATGGAAGGGTTCGGTGTACATACTTTNCA-G TTGATTAACAAGGCTGGAAAAGAAACCTATGTCEST: gi|100403908|gb|BY991237.1|BY991237
genomic: TCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTT-CAAGgtacgtctgg ... caacgtgcagTTGATTAACAAGGCTGGAAAAGAAACCTATGTC
EST: TCCTGCCGACTACCGTCACATGNAAGGTTTCGGTGTACATACTTTTCA-G TTGATTAACAAGGEST: gi|162153220|gb|FC329002.1|FC329002
genomic: TCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTT-CAAGgtacgtctgg ... caacgtgcagTTGATTAACAAGG
EST: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAG TTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCTEST: gi|162277023|gb|FC453745.1|FC453745
genomic: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAGgtacgtctgg ... caacgtgcagTTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCT
EST: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAG TTGATTAACA-GGCTGGAAAAGAAACCTATGTCAAGTTTCACTEST: gi|162170490|gb|FC347649.1|FC347649
genomic: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAGgtacgtctgg ... caacgtgcagTTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACT
EST: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAG TTGATTAACAAGGCTGGEST: gi|100444734|gb|BY982563.1|BY982563
genomic: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAGgtacgtctgg ... caacgtgcagTTGATTAACAAGGCTGG
EST: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAG TTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCTEST: gi|162153366|gb|FC329876.1|FC329876
genomic: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAGgtacgtctgg ... caacgtgcagTTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCT
EST: TCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTTCAAG T-GATTAACAAGGCTGGAAEST: gi|100393831|gb|BY953524.1|BY953524
genomic: TCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTT-CAAGgtacgtctgg ... caacgtgcagTTGATTAACAAGGCTGGAA
EST: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAG TTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCTEST: gi|162179286|gb|FC356235.1|FC356235
genomic: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAGgtacgtctgg ... caacgtgcagTTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCT
EST: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAG TTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCTEST: gi|162221788|gb|FC398355.1|FC398355
genomic: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAGgtacgtctgg ... caacgtgcagTTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCT
EST: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAG TTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCTEST: gi|162175799|gb|FC352101.1|FC352101
genomic: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAGgtacgtctgg ... caacgtgcagTTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCT
EST: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAG TTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCTEST: gi|67507796|gb|BJ940673.1|BJ940673
genomic: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAGgtacgtctgg ... caacgtgcagTTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCT
EST: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAG TTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCTEST: gi|162162217|gb|FC337999.1|FC337999
genomic: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAGgtacgtctgg ... caacgtgcagTTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCT
EST: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAG TTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCTEST: gi|162185084|gb|FC362218.1|FC362218
genomic: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAGgtacgtctgg ... caacgtgcagTTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCT
EST: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAG TTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCTEST: gi|162185869|gb|FC360969.1|FC360969
genomic: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAGgtacgtctgg ... caacgtgcagTTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCT
EST: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAG TTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCTEST: gi|162200569|gb|FC376764.1|FC376764
genomic: TTCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTCAAGgtacgtctgg ... caacgtgcagTTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCT
EST: TCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTTNCA-G TTGATTAACAAGGCTGGAAA
genomic: TCCTGCCGACTACCGTCACATGGAAGGTTTCGGTGTACATACTTT-CAAGgtacgtctgg ... caacgtgcagTTGATTAACAAGGCTGGAAA
agatttaatactgttcttggtgcaaccgtgctcacaatgatgtttcaacgtgcagTTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCTACATGCGGTGTGAAGAATCTGTTGGACGATGAGGCTGTGCTAGTCGGTG
tgctcac putative branch site (score: 2)
taatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtctggatataataattggttccagctgcgtcggtcataacagagtttttgcgcgtgcagatgctgagtttacccttgaagatttaatactgttcttggtgcaaccgtgctcacaatgatgtttcaacgtgcagTTGATTAACAAGGCTGGAAAAGAAACCTATGTCAAGTTTCACTGGAAGCCTACATGCGGTGTGAAGAATCTGTTGGACGATGAGGCTGTGCTAGTCGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA