1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTCCCATATTGAGGCCTCTCCGATTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaagagtgggattttgatgggtttttggtcttgtggagacatcttgcgtggttttggtggaagtccgatgtagaaacggtgattggaatgttatgagcggaattgggttgtgggattgagtgtgttgagagctgtttttgattggtgcggtgtgggtcctgcag
species | Physcomitrella patens |
transcript | PP1S422_8V6.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|100379929|gb|BY968761.1|BY968761
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|18362726|gb|BJ194797.1|BJ194797
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|162263891|gb|FC439186.1|FC439186
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|100387785|gb|BY970530.1|BY970530
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|18369486|gb|BJ201573.1|BJ201573
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|100420776|gb|BY993500.1|BY993500
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|18369376|gb|BJ201462.1|BJ201462
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|162198939|gb|FC372966.1|FC372966
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|100405955|gb|BY991467.1|BY991467
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|100403908|gb|BY991237.1|BY991237
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|18375232|gb|BJ206810.1|BJ206810
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|100390958|gb|BY989441.1|BY989441
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|162264609|gb|FC441204.1|FC441204
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|162277023|gb|FC453745.1|FC453745
genomic: GAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|18357595|gb|BJ189654.1|BJ189654
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|18360095|gb|BJ192157.1|BJ192157
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|100409213|gb|BY991902.1|BY991902
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|100398468|gb|BY972621.1|BY972621
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|100417260|gb|BY957246.1|BY957246
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|100385326|gb|BY950918.1|BY950918
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|100369007|gb|BY984979.1|BY984979
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|18349176|gb|BJ181225.1|BJ181225
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|208383448|gb|DC911200.1|DC911200
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|162153366|gb|FC329876.1|FC329876
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|208357600|gb|DC914014.1|DC914014
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|100380022|gb|BY968807.1|BY968807
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGAEST: gi|18368883|gb|BJ200968.1|BJ200968
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|100443965|gb|BY982193.1|BY982193
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|18360171|gb|BJ192233.1|BJ192233
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|100352508|gb|BY945307.1|BY945307
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|18363429|gb|BJ195501.1|BJ195501
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|18358321|gb|BJ190380.1|BJ190380
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|162211185|gb|FC386897.1|FC386897
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|18329680|gb|BJ161686.1|BJ161686
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|162200017|gb|FC376479.1|FC376479
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|18373965|gb|BJ205543.1|BJ205543
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGEST: gi|162175927|gb|FC351605.1|FC351605
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCCATATTGAGGCCTCTCCGATTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaagagtgggattttgatgggtttttggtcttgtggagacatcttgcgtggttttggtggaagtccgatgtagaaacggtgattggaatgttatgagcggaattgggttgtgggattgagtgtgttgagagctgtttttgattggtgcggtgtgggtcctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG