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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgaagagtgggattttgatgggtttttggtcttgtggagacatcttgcgtggttttggtggaagtccgatgtagaaacggtgattggaatgttatgagcggaattgggttgtgggattgagtgtgttgagagctgtttttgattggtgcggtgtgggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG

Basic information

species Physcomitrella patens
transcript PP1S422_8V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162267693|gb|FC443475.1|FC443475
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100379929|gb|BY968761.1|BY968761
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|18362726|gb|BJ194797.1|BJ194797
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|162263891|gb|FC439186.1|FC439186
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100387785|gb|BY970530.1|BY970530
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|18369486|gb|BJ201573.1|BJ201573
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100420776|gb|BY993500.1|BY993500
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|18369376|gb|BJ201462.1|BJ201462
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|162198939|gb|FC372966.1|FC372966
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100405955|gb|BY991467.1|BY991467
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100403908|gb|BY991237.1|BY991237
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|18375232|gb|BJ206810.1|BJ206810
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100390958|gb|BY989441.1|BY989441
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|162264609|gb|FC441204.1|FC441204
EST:     GAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|162277023|gb|FC453745.1|FC453745
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|18357595|gb|BJ189654.1|BJ189654
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|18360095|gb|BJ192157.1|BJ192157
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100409213|gb|BY991902.1|BY991902
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100398468|gb|BY972621.1|BY972621
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100417260|gb|BY957246.1|BY957246
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100385326|gb|BY950918.1|BY950918
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100369007|gb|BY984979.1|BY984979
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|18349176|gb|BJ181225.1|BJ181225
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|208383448|gb|DC911200.1|DC911200
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|162153366|gb|FC329876.1|FC329876
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|208357600|gb|DC914014.1|DC914014
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100380022|gb|BY968807.1|BY968807
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGA
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|18368883|gb|BJ200968.1|BJ200968
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100443965|gb|BY982193.1|BY982193
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|18360171|gb|BJ192233.1|BJ192233
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100352508|gb|BY945307.1|BY945307
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|18363429|gb|BJ195501.1|BJ195501
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|18358321|gb|BJ190380.1|BJ190380
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|162211185|gb|FC386897.1|FC386897
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|18329680|gb|BJ161686.1|BJ161686
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|162200017|gb|FC376479.1|FC376479
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|18373965|gb|BJ205543.1|BJ205543
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|162175927|gb|FC351605.1|FC351605
EST:     GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAG                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 92

GTCCCATATTGAGGCCTCTCCGATTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTGTAAGTGACTTGTGACGCCCACCTGAGgtaattgaag ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgggattgagtgtgttgagagctgtttttgattggtgcggtgtgggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG
                          ttttgat  putative branch site (score: 92)
                         tttttgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattgaagagtgggattttgatgggtttttggtcttgtggagacatcttgcgtggttttggtggaagtccgatgtagaaacggtgattggaatgttatgagcggaattgggttgtgggattgagtgtgttgagagctgtttttgattggtgcggtgtgggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA