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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaatgtagattctgtcctcaaacaggatttttatgcctgcgacatgccaggcaactgatcgctcacctaatttctcctttctggaatggttaatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGATCACCAGTATGGAACAACAATAACTCCTTGACAGTTGGCCCAAGAGGAC

Basic information

species Physcomitrella patens
transcript PP1S422_8V6.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100384130|gb|BY950516.1|BY950516
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162267693|gb|FC443475.1|FC443475
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100379929|gb|BY968761.1|BY968761
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|18362726|gb|BJ194797.1|BJ194797
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCCTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162263891|gb|FC439186.1|FC439186
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100387785|gb|BY970530.1|BY970530
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|18369486|gb|BJ201573.1|BJ201573
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100420776|gb|BY993500.1|BY993500
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162240135|gb|FC418262.1|FC418262
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100435548|gb|BY960968.1|BY960968
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|18369376|gb|BJ201462.1|BJ201462
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162198939|gb|FC372966.1|FC372966
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100404321|gb|BY973518.1|BY973518
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100405955|gb|BY991467.1|BY991467
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162180481|gb|FC356123.1|FC356123
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCATGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100403908|gb|BY991237.1|BY991237
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|18375232|gb|BJ206810.1|BJ206810
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100390958|gb|BY989441.1|BY989441
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATTGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162157350|gb|FC333465.1|FC333465
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162264609|gb|FC441204.1|FC441204
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162277023|gb|FC453745.1|FC453745
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100358243|gb|BY965545.1|BY965545
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162170490|gb|FC347649.1|FC347649
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|18357595|gb|BJ189654.1|BJ189654
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|18360095|gb|BJ192157.1|BJ192157
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100409213|gb|BY991902.1|BY991902
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100398468|gb|BY972621.1|BY972621
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|18355835|gb|BJ187894.1|BJ187894
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100417260|gb|BY957246.1|BY957246
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100376391|gb|BY986144.1|BY986144
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100385326|gb|BY950918.1|BY950918
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100369007|gb|BY984979.1|BY984979
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|18349176|gb|BJ181225.1|BJ181225
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|208383448|gb|DC911200.1|DC911200
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162153366|gb|FC329876.1|FC329876
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|208357600|gb|DC914014.1|DC914014
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162158124|gb|FC333919.1|FC333919
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|67569863|gb|BJ942687.1|BJ942687
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162179286|gb|FC356235.1|FC356235
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100380022|gb|BY968807.1|BY968807
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGAATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAAGCACGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|18368883|gb|BJ200968.1|BJ200968
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCCTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100443965|gb|BY982193.1|BY982193
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|18360171|gb|BJ192233.1|BJ192233
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCCTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100352508|gb|BY945307.1|BY945307
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|18363429|gb|BJ195501.1|BJ195501
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162200569|gb|FC376764.1|FC376764
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|18358321|gb|BJ190380.1|BJ190380
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162211185|gb|FC386897.1|FC386897
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|18329680|gb|BJ161686.1|BJ161686
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162200017|gb|FC376479.1|FC376479
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|18373965|gb|BJ205543.1|BJ205543
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCANGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162175927|gb|FC351605.1|FC351605
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccaggcaactgatcgctcacctaatttctcctttctggaatggttaatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGATCACCAGTATGGAACAACAATAACTCCTTGACAGTTGGCCCAAGAGGAC
                                            ttaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gaatgtagattctgtcctcaaacaggatttttatgcctgcgacatgccaggcaactgatcgctcacctaatttctcctttctggaatggttaatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGATCACCAGTATGGAACAACAATAACTCCTTGACAGTTGGCCCAAGAGGAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA