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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAGgtgaacaaagctccttgctactgtatgaatcatttttgtgcattttgagttctctgaaaaatgtatgcttacatgagctcacttgcaagtagtgatacgtgtggcgcacaaataccttagactttaaaagtctgaggggaatgatgggaattatttttgcag

Basic information

species Physcomitrella patens
transcript PP1S39_119V6.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37853420|gb|BJ611428.1|BJ611428
EST:     TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAG                         CTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATC
genomic: TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAGgtgaacaaag ... atttttgcagCTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATC
EST: gi|18337920|gb|BJ169944.1|BJ169944
EST:     TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAG                         CTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATC
genomic: TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAGgtgaacaaag ... atttttgcagCTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATC
EST: gi|37844130|gb|BJ602138.1|BJ602138
EST:     TCTGATTACCTTCGTTGAAAATCTTCCTGATCCTTTTCTCTCGAG                         CTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATC
genomic: TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAGgtgaacaaag ... atttttgcagCTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATC
EST: gi|208351294|gb|DC922073.1|DC922073
EST:     TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAG                         CTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATC
genomic: TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAGgtgaacaaag ... atttttgcagCTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATC
EST: gi|18360039|gb|BJ192100.1|BJ192100
EST:     TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAG                         CTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATC
genomic: TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAGgtgaacaaag ... atttttgcagCTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATC
EST: gi|208371622|gb|DC952264.1|DC952264
EST:     TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAG                         CTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATC
genomic: TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAGgtgaacaaag ... atttttgcagCTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATC