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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgatttttggcggactctggtggtagccgtccgaaatcgtttggaacttttgtatgattagattctcggtgacggttgaaaattgtgctgtgcttggagGTTTTGCAGGAGGATTGAAATAGTTCGCGACGACATTGGGGTTAGTTTACCTGTTTTCGATTGATCAATCGGTGGCCTTTGTGCATCAGTTCTTGAAAGG

Basic information

species Physcomitrella patens
transcript PP1S39_119V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37853420|gb|BJ611428.1|BJ611428
EST:     TGTTGTGCAGGGAATCGGCTGGCCATGGCGCGGTTCCCTCCTCCTTCNTC                         GTTTTGCAGGAGGATTGAAATAGTTCGCGACGACATTGGGGTTAGTTTAC
genomic: TGTTGTGCAGGGAATCGGCTGGCCATGGCGCGGTTCCCTCCTCC-TCCTCgtgagttgct ... gtgcttggagGTTTTGCAGGAGGATTGAAATAGTTCGCGACGACATTGGGGTTAGTTTAC
EST: gi|18360039|gb|BJ192100.1|BJ192100
EST:     GTAGTGTTGTGCAGGGAATCGGCTGGCCATGGCGCGGTTCCCTCCTCCTCCTC                       
genomic: GTAGTGTTGTGCAGGGAATCGGCTGGCCATGGCGCGGTTCCCTCCTCCTCCTCgtgagttgct ... gtgcttgg


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacttttgtatgattagattctcggtgacggttgaaaattgtgctgtgcttggagGTTTTGCAGGAGGATTGAAATAGTTCGCGACGACATTGGGGTTAGTTTACCTGTTTTCGATTGATCAATCGGTGGCCTTTGTGCATCAGTTCTTGAAAGG
                               ttgaaaatt  TA-rich tract