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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttaaagatcatacgtagaattattccataatcatgcaactggaactgacgttgggacccatgatataatatccgttggtgtgttatgtgattacggcagTCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAG

Basic information

species Physcomitrella patens
transcript PP1S39_119V6.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37853420|gb|BJ611428.1|BJ611428
EST:     GAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAAGA                         TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAG
genomic: GAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAAGAgtgagtgtac ... attacggcagTCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAG
EST: gi|18337920|gb|BJ169944.1|BJ169944
EST:     GAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAAGA                         TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAG
genomic: GAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAAGAgtgagtgtac ... attacggcagTCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAG
EST: gi|37844130|gb|BJ602138.1|BJ602138
EST:     GAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAAGA                         TCTGATTACCTTCGTTGAAAATCTTCCTGATCCTTTTCTCTCGAG
genomic: GAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAAGAgtgagtgtac ... attacggcagTCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAG
EST: gi|208351294|gb|DC922073.1|DC922073
EST:     GAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAAGA                         TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAG
genomic: GAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAAGAgtgagtgtac ... attacggcagTCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAG
EST: gi|18360039|gb|BJ192100.1|BJ192100
EST:     GAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAAGA                         TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAG
genomic: GAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAAGAgtgagtgtac ... attacggcagTCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAG
EST: gi|208371622|gb|DC952264.1|DC952264
EST:     GAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAAGA                         TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAG
genomic: GAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAAGAgtgagtgtac ... attacggcagTCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgacgttgggacccatgatataatatccgttggtgtgttatgtgattacggcagTCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAG
 aactgac  putative branch site (score: 2)
               atgatataatat  TA-rich tract