1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgaacaaagctccttgctactgtatgaatcatttttgtgcattttgagttctctgaaaaatgtatgcttacatgagctcacttgcaagtagtgatacgtgtggcgcacaaataccttagactttaaaagtctgaggggaatgatgggaattatttttgcagCTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATCCCGTCGCCATTGGTGGAAGTTCTAGACAGTAAATAAAGTAACGCCTGCT
species | Physcomitrella patens |
transcript | PP1S39_119V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAG CTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATCEST: gi|18337920|gb|BJ169944.1|BJ169944
genomic: TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAGgtgaacaaag ... atttttgcagCTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATC
EST: TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAG CTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATCEST: gi|37844130|gb|BJ602138.1|BJ602138
genomic: TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAGgtgaacaaag ... atttttgcagCTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATC
EST: TCTGATTACCTTCGTTGAAAATCTTCCTGATCCTTTTCTCTCGAG CTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATCEST: gi|208351294|gb|DC922073.1|DC922073
genomic: TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAGgtgaacaaag ... atttttgcagCTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATC
EST: TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAG CTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATCEST: gi|18360039|gb|BJ192100.1|BJ192100
genomic: TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAGgtgaacaaag ... atttttgcagCTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATC
EST: TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAG CTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATCEST: gi|208371622|gb|DC952264.1|DC952264
genomic: TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAGgtgaacaaag ... atttttgcagCTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATC
EST: TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAG CTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATC
genomic: TCTGATTACCTTCGTTGAAAATCTTCCTGATCCGTTTCTCTCGAGgtgaacaaag ... atttttgcagCTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATC
acaaataccttagactttaaaagtctgaggggaatgatgggaattatttttgcagCTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATCCCGTCGCCATTGGTGGAAGTTCTAGACAGTAAATAAAGTAACGCCTGCT
ttattttt CT-rich tract
aattattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaacaaagctccttgctactgtatgaatcatttttgtgcattttgagttctctgaaaaatgtatgcttacatgagctcacttgcaagtagtgatacgtgtggcgcacaaataccttagactttaaaagtctgaggggaatgatgggaattatttttgcagCTCCGACGGAGTGGGACATCAGCCGTGGCCATATGATCGGCCTTCGAAATCCCGTCGCCATTGGTGGAAGTTCTAGACAGTAAATAAAGTAACGCCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG