1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagttgcacataagcacttcgctcttcctcttgcagacagtgtgtggtattaagccgtaaatcaagtcaagaatatgatctgatggactgcaatgtttggcttgtggttgcagTTATGTCCCCGACACAATCGACGTGAACTCCAGTAGACCTCAAAAAGCTTCTGGTTGCGAATGTTGAAGACCATTGGAGGAGCTAGTGATGGTGCTTGCC
species | Physcomitrella patens |
transcript | PP1S398_18V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTCAGGTTATTGCTAAGAATGCATTGAAGAACGAGACAGAGGAAGAAAT TTATGTTCCCGEST: gi|162275203|gb|FC451179.1|FC451179
genomic: TTTCAGGTTATTGCTAAGAATGCATTGAAGAACGAGACAGAGGAAGAAATgtaagttgca ... gtggttgcagTTATGTCCCCG
EST: TTTCAGGTTATTGCTAAGAATGCATTGAAGAACGAGACAGAGGAAGAAAT TTATGTCCCCGACACAATCGACGTGAACTCCAGTAGACCTCAAAAAGCTTCEST: gi|162224645|gb|FC401893.1|FC401893
genomic: TTTCAGGTTATTGCTAAGAATGCATTGAAGAACGAGACAGAGGAAGAAATgtaagttgca ... gtggttgcagTTATGTCCCCGACACAATCGACGTGAACTCCAGTAGACCTCAAAAAGCTTC
EST: TTTCAGGTTATTGCTAAGAATGCATTGAAGAACGAGACAGAGGAAGAAAT TTATGTCCCCGACACAATCGACGTGAACTCCAGTATACCTCAAAAAGCTTCEST: gi|37821766|gb|BJ579832.1|BJ579832
genomic: TTTCAGGTTATTGCTAAGAATGCATTGAAGAACGAGACAGAGGAAGAAATgtaagttgca ... gtggttgcagTTATGTCCCCGACACAATCGACGTGAACTCCAGTAGACCTCAAAAAGCTTC
EST: TTTCAGGTTATTGCTAAGAATGCATTGAAGAACGAGACAGAGGAAGAAAT TTATGTCCCCGACACAATCGACGTGAACTCCAGTAGACCTCAAAAAGCTTCEST: gi|22491664|gb|BU051587.1|BU051587
genomic: TTTCAGGTTATTGCTAAGAATGCATTGAAGAACGAGACAGAGGAAGAAATgtaagttgca ... gtggttgcagTTATGTCCCCGACACAATCGACGTGAACTCCAGTAGACCTCAAAAAGCTTC
EST: TTTCAGGTTATTGCTAAGAATGCATTGAAGAACGAGACAGAGGAAGAAAT TTATGTCCCCGACACAATCGACGTGAACTCCAGTAGACCTCAAAAAGCTTCEST: gi|162278758|gb|FC454868.1|FC454868
genomic: TTTCAGGTTATTGCTAAGAATGCATTGAAGAACGAGACAGAGGAAGAAATgtaagttgca ... gtggttgcagTTATGTCCCCGACACAATCGACGTGAACTCCAGTAGACCTCAAAAAGCTTC
EST: TTTCAGGTTATTGCTAAGAATGCATTGNAGAACGAGACAGAGGAAGAAAT TTATGTCCCCGACACAATCGACGTGTACTCCAGTAGACCTCANAAAGCTTCEST: gi|37826297|gb|BJ584309.1|BJ584309
genomic: TTTCAGGTTATTGCTAAGAATGCATTGAAGAACGAGACAGAGGAAGAAATgtaagttgca ... gtggttgcagTTATGTCCCCGACACAATCGACGTGAACTCCAGTAGACCTCAAAAAGCTTC
EST: TTTCAGGTTATTGCTAAGAATGCATTGAAGAACGAGACAGAGGAAGAAAT TTATGTCCCCGACACAATCGACGTGAACTCCAGTAGACCTCAAAAAGCTTCEST: gi|162239904|gb|FC415743.1|FC415743
genomic: TTTCAGGTTATTGCTAAGAATGCATTGAAGAACGAGACAGAGGAAGAAATgtaagttgca ... gtggttgcagTTATGTCCCCGACACAATCGACGTGAACTCCAGTAGACCTCAAAAAGCTTC
EST: TTTCAGGTTATTGCTAAGAATGCATTGAAGAACGAGACAGAGGAAGAAAT TTATGTCCCCGACACAATCGACGTGAACTCCAGTAGACCTCAAAAAGCTTCEST: gi|100394822|gb|BY989942.1|BY989942
genomic: TTTCAGGTTATTGCTAAGAATGCATTGAAGAACGAGACAGAGGAAGAAATgtaagttgca ... gtggttgcagTTATGTCCCCGACACAATCGACGTGAACTCCAGTAGACCTCAAAAAGCTTC
EST: TTTCAAGTTATTGCTAAGAATGCATTGAAGAACGAGACAGAGGAAGAAAT TTATGTCCCCGACACAATCGAACGTGA-CTCCAGTAGACCTCAAAAAGCTTEST: gi|208365879|gb|DC951136.1|DC951136
genomic: TTTCAGGTTATTGCTAAGAATGCATTGAAGAACGAGACAGAGGAAGAAATgtaagttgca ... gtggttgcagTTATGTCCCCGACACAATCGA-CGTGAACTCCAGTAGACCTCAAAAAGCTT
EST: TTTCAGGTTATTGCTAAGAATGCATTGAAGAACGAGACAGAGGAAGAAAT TTATGTCCCCGACACAATCGACGTGAACTCCAGTAGACCTCAAAAAGCTTCEST: gi|162278757|gb|FC454867.1|FC454867
genomic: TTTCAGGTTATTGCTAAGAATGCATTGAAGAACGAGACAGAGGAAGAAATgtaagttgca ... gtggttgcagTTATGTCCCCGACACAATCGACGTGAACTCCAGTAGACCTCAAAAAGCTTC
EST: TTTCAGGTTATTGCTAAGAATGCATTGAAGAACGAGACAGAGGAAGAAAT TTATGTCCCCGACACAATCGACGTGAACTCCAGTAGACCTCAAAAAGCTTC
genomic: TTTCAGGTTATTGCTAAGAATGCATTGAAGAACGAGACAGAGGAAGAAATgtaagttgca ... gtggttgcagTTATGTCCCCGACACAATCGACGTGAACTCCAGTAGACCTCAAAAAGCTTC
aaatcaagtcaagaatatgatctgatggactgcaatgtttggcttgtggttgcagTTATGTCCCCGACACAATCGACGTGAACTCCAGTAGACCTCAAAAAGCTTCTGGTTGCGAATGTTGAAGACCATTGGAGGAGCTAGTGATGGTGCTTGCC
atctgat putative branch site (score: 21)
aagaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgcacataagcacttcgctcttcctcttgcagacagtgtgtggtattaagccgtaaatcaagtcaagaatatgatctgatggactgcaatgtttggcttgtggttgcagTTATGTCCCCGACACAATCGACGTGAACTCCAGTAGACCTCAAAAAGCTTCTGGTTGCGAATGTTGAAGACCATTGGAGGAGCTAGTGATGGTGCTTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT