1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgttgaatataagttaaagtgcatcacgttttatcaatttcctcgtagtctttttattcacatactttcccactgtattttcttttgttatgataacagAGTTGGAAAGACGTCGCTGATGAATCAGTATGTTAACAAGAAGTTCAGCAACCAGTATAAGGCCACGATTGGAGCAGATTTTTTGACAAAAGAAGTGCAA
species | Physcomitrella patens |
transcript | PP1S398_18V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGGCACGTAAGCGGACCTTGTTGAAGGTGATTATTCTTGGCGACAGCGG AGTTGGAAAGACGTCGCTGATGAATCAGTATGTTAACAAGAAGTTCAGCAAEST: gi|162239905|gb|FC415744.1|FC415744
genomic: TCGGCACGTAAGCGGACCTTGTTGAAGGTGATTATTCTTGGCGACAGCGGgtaagctcta ... atgataacagAGTTGGAAAGACGTCGCTGATGAATCAGTATGTTAACAAGAAGTTCAGCAA
EST: TCGGCACGTAAGCGGACCTTGTTGAAGGTGATTATTCTTGGCGACAGCGG AGTTGGAAAGACGTCGCTGATGAATCAGTATGTTAACAAGAAGTTCAGCAAEST: gi|22491664|gb|BU051587.1|BU051587
genomic: TCGGCACGTAAGCGGACCTTGTTGAAGGTGATTATTCTTGGCGACAGCGGgtaagctcta ... atgataacagAGTTGGAAAGACGTCGCTGATGAATCAGTATGTTAACAAGAAGTTCAGCAA
EST: TCGGCACGTAAGCGGACCTTGTTGAAGGTGATTATTCTTGGCGACAGCGG AGTTGGAAAGACGTCGCTGATGAATCAGTATGTTAACAAGAAGTTCAGCAAEST: gi|162278758|gb|FC454868.1|FC454868
genomic: TCGGCACGTAAGCGGACCTTGTTGAAGGTGATTATTCTTGGCGACAGCGGgtaagctcta ... atgataacagAGTTGGAAAGACGTCGCTGATGAATCAGTATGTTAACAAGAAGTTCAGCAA
EST: TCGGCACGTAAGCGGACCTTGTTGAAGGTGATTATTCTTGGCGACAGCGG AGTTGGAAAGACGTCGCTGATGAATCAGTATGTTAACAAGAAGTTCAGCAAEST: gi|100394822|gb|BY989942.1|BY989942
genomic: TCGGCACGTAAGCGGACCTTGTTGAAGGTGATTATTCTTGGCGACAGCGGgtaagctcta ... atgataacagAGTTGGAAAGACGTCGCTGATGAATCAGTATGTTAACAAGAAGTTCAGCAA
EST: TCGGCACGTAAGCGGACCTTGTTGAAGGTGATTATTCTTGGCGACAGCGG AGTTGGAAAGACGTCGCTGATGAATCAGTATGTTAACAAGAAGTTCAGCAAEST: gi|208390030|gb|DC938085.1|DC938085
genomic: TCGGCACGTAAGCGGACCTTGTTGAAGGTGATTATTCTTGGCGACAGCGGgtaagctcta ... atgataacagAGTTGGAAAGACGTCGCTGATGAATCAGTATGTTAACAAGAAGTTCAGCAA
EST: TCGGCACGTAAGCGGACCTTGTTGAAGGTGATTATTCTTGGCGACAGCGG AGTTGGAAAGACGTCGCTGATGAATCAGTATGTTAACAAGAAGTTCAGCAAEST: gi|18342622|gb|BJ174657.1|BJ174657
genomic: TCGGCACGTAAGCGGACCTTGTTGAAGGTGATTATTCTTGGCGACAGCGGgtaagctcta ... atgataacagAGTTGGAAAGACGTCGCTGATGAATCAGTATGTTAACAAGAAGTTCAGCAA
EST: TCGGCACGTAAGCGGACCTTGTTGAAGGTGATTATTCTTGGCGACAGCGG AGTTGGAAAGACGTCGCTGATGAATCAGTATGTTAACAAGAAGTTCAGCAAEST: gi|100391677|gb|BY989497.1|BY989497
genomic: TCGGCACGTAAGCGGACCTTGTTGAAGGTGATTATTCTTGGCGACAGCGGgtaagctcta ... atgataacagAGTTGGAAAGACGTCGCTGATGAATCAGTATGTTAACAAGAAGTTCAGCAA
EST: TCGGCACGTAAGCGGACCTTGTTGAAGGTGATTATTCTTGGCGACAGCGG AGTTGGAAAGACGTCGCTGATGAATCAGTATGTTAACAAGAAGTTCAGCAA
genomic: TCGGCACGTAAGCGGACCTTGTTGAAGGTGATTATTCTTGGCGACAGCGGgtaagctcta ... atgataacagAGTTGGAAAGACGTCGCTGATGAATCAGTATGTTAACAAGAAGTTCAGCAA
gtagtctttttattcacatactttcccactgtattttcttttgttatgataacagAGTTGGAAAGACGTCGCTGATGAATCAGTATGTTAACAAGAAGTTCAGCAACCAGTATAAGGCCACGATTGGAGCAGATTTTTTGACAAAAGAAGTGCAA
ttttcttttgttat CT-rich tract
tattttcttttgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttgaatataagttaaagtgcatcacgttttatcaatttcctcgtagtctttttattcacatactttcccactgtattttcttttgttatgataacagAGTTGGAAAGACGTCGCTGATGAATCAGTATGTTAACAAGAAGTTCAGCAACCAGTATAAGGCCACGATTGGAGCAGATTTTTTGACAAAAGAAGTGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
-tgttgaa