1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCAAGCCCATCCGATCCAGATAATTTTCCTTTTGTGGTCCTAGGCAACAAAGTTGACGTGGATGGTGGCAACAGTCGAGTGgtgagtttactaggcttgaagtctgatttatttacagattattacagcaagcatcacgtagctcatatcgatgggtagtacagttcaagccttatactcctctggttttacgaacggatatctcactgttcttcaacttttttgaaccaag
species | Physcomitrella patens |
transcript | PP1S398_18V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGTGGTCCTAGGCAACAAAGTTGACGTGGATGGTGGCAACAGTCGAGTG GTTTCGGAGAAGAAGGCCAAAGCATGGTGTGCAGCGAAAGGAGACATTCCCEST: gi|162224645|gb|FC401893.1|FC401893
genomic: TTGTGGTCCTAGGCAACAAAGTTGACGTGGATGGTGGCAACAGTCGAGTGgtgagtttac ... ttgaaccaagGTTTCGGAGAAGAAGGCCAAAGCATGGTGTGCAGCGAAAGGAGACATTCCC
EST: CTAGGCAACAAAGTTGACGTGGATGGTGGCAACAGTCGAGTG GTTTCGGAGAAGAAGGCCAAAGCATGGTGTGCAGCGAAAGGAGACATTCCCEST: gi|37821766|gb|BJ579832.1|BJ579832
genomic: CTAGGCAACAAAGTTGACGTGGATGGTGGCAACAGTCGAGTGgtgagtttac ... ttgaaccaagGTTTCGGAGAAGAAGGCCAAAGCATGGTGTGCAGCGAAAGGAGACATTCCC
EST: TCCTAGGCANCAAAGTTGACGTGGATGGTGGCAACAGTCGAGTG GTTTCGGAGAAGAAGGCCAAAGCATGGTGTGCAGCGAAAGGAGACATTCCCEST: gi|22491664|gb|BU051587.1|BU051587
genomic: TCCTAGGCAACAAAGTTGACGTGGATGGTGGCAACAGTCGAGTGgtgagtttac ... ttgaaccaagGTTTCGGAGAAGAAGGCCAAAGCATGGTGTGCAGCGAAAGGAGACATTCCC
EST: TTGTGGTCCTAGGCAACAAAGTTGACGTGGATGGTGGCAACAGTCGAGTG GTTTCGGAGAAGAAGGCCAAAGCATGGTGTGCAGCGAAAGGAGACATTCCCEST: gi|162278758|gb|FC454868.1|FC454868
genomic: TTGTGGTCCTAGGCAACAAAGTTGACGTGGATGGTGGCAACAGTCGAGTGgtgagtttac ... ttgaaccaagGTTTCGGAGAAGAAGGCCAAAGCATGGTGTGCAGCGAAAGGAGACATTCCC
EST: TTGTGGTCCTAGGCAACAAAGTTGACGTGGATGGTGGCAACAGTCGAGTG GTTTCGGAGAAGAAGGCCAAAGCATGGTGTGCAGCGAAAGGAGACATTCCCEST: gi|37826297|gb|BJ584309.1|BJ584309
genomic: TTGTGGTCCTAGGCAACAAAGTTGACGTGGATGGTGGCAACAGTCGAGTGgtgagtttac ... ttgaaccaagGTTTCGGAGAAGAAGGCCAAAGCATGGTGTGCAGCGAAAGGAGACATTCCC
EST: TTGTGGTCCTAGGCAACAAAGTTGACGTGGATGGTGGCAACAGTCGAGTG GTTTCGGAGAAGAAGGCCAAAGCATGGTGTGCAGCGAAAGGAGACATTCCCEST: gi|162239904|gb|FC415743.1|FC415743
genomic: TTGTGGTCCTAGGCAACAAAGTTGACGTGGATGGTGGCAACAGTCGAGTGgtgagtttac ... ttgaaccaagGTTTCGGAGAAGAAGGCCAAAGCATGGTGTGCAGCGAAAGGAGACATTCCC
EST: TTGTGGTCCTAGGCAACAAAGTTGACGTGGATGGTGGCAACAGTCGAGTG GTTTCGGAGAAGAAGGCCAAAGCATGGTGTGCAGCGAAAGGAGACATTCCCEST: gi|100394822|gb|BY989942.1|BY989942
genomic: TTGTGGTCCTAGGCAACAAAGTTGACGTGGATGGTGGCAACAGTCGAGTGgtgagtttac ... ttgaaccaagGTTTCGGAGAAGAAGGCCAAAGCATGGTGTGCAGCGAAAGGAGACATTCCC
EST: TTGTGGTCCTAGGCAACAAAGTTGACGTGGATGGTGGCAACAGTCGAGTG GTTTCGGAGAAGAAGGCCAAAGCATGGTGTGCAGCGAAAGGAGACATTCCCEST: gi|208390030|gb|DC938085.1|DC938085
genomic: TTGTGGTCCTAGGCAACAAAGTTGACGTGGATGGTGGCAACAGTCGAGTGgtgagtttac ... ttgaaccaagGTTTCGGAGAAGAAGGCCAAAGCATGGTGTGCAGCGAAAGGAGACATTCCC
EST: TTGTGGTCCTAGGCAACAAAGTTGACGTGGATGGTGGCAACAGTCGAGTG GTTTCGGAGAAAAAGGCCAAAGCATGGTGTGCAGCGAAAGGAAACATTCCCEST: gi|208365879|gb|DC951136.1|DC951136
genomic: TTGTGGTCCTAGGCAACAAAGTTGACGTGGATGGTGGCAACAGTCGAGTGgtgagtttac ... ttgaaccaagGTTTCGGAGAAGAAGGCCAAAGCATGGTGTGCAGCGAAAGGAGACATTCCC
EST: TTGTGGTCCTAGGCAACAAAGTTGACGTGGATGGTGGCAACAGTCGAGTG GTTTCGGAGAAGAAGGCCAAAGCATGGTGTGCAGCGAAAGGAGACATTCCCEST: gi|162278757|gb|FC454867.1|FC454867
genomic: TTGTGGTCCTAGGCAACAAAGTTGACGTGGATGGTGGCAACAGTCGAGTGgtgagtttac ... ttgaaccaagGTTTCGGAGAAGAAGGCCAAAGCATGGTGTGCAGCGAAAGGAGACATTCCC
EST: TTGTGGTCCTAGGCAACAAAGTTGACGTGGATGGTGGCAACAGTCGAGTG GTTTCGGAGAAGAAGGCCAAAGCATGGTGTGCAGCGAAAGGAGACATTCCC
genomic: TTGTGGTCCTAGGCAACAAAGTTGACGTGGATGGTGGCAACAGTCGAGTGgtgagtttac ... ttgaaccaagGTTTCGGAGAAGAAGGCCAAAGCATGGTGTGCAGCGAAAGGAGACATTCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAGCCCATCCGATCCAGATAATTTTCCTTTTGTGGTCCTAGGCAACAAAGTTGACGTGGATGGTGGCAACAGTCGAGTGgtgagtttactaggcttgaagtctgatttatttacagattattacagcaagcatcacgtagctcatatcgatgggtagtacagttcaagccttatactcctctggttttacgaacggatatctcactgttcttcaacttttttgaaccaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG