1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gaaagattatggtcacatgtgtcacttgtgaggaattgcagtcttcgattaagatagatagattctcacatatttgttgtacttggaacttgttttttagGGGATATGGTTGTGTGAGCACCGCGACCACGGAGGTGCGCGGAAGGTGGTTATCACCATGACTGGAGTTTAGAGATTTCCCCCAAAGTCCTTCTAGTCTG
species | Physcomitrella patens |
transcript | PP1S397_39V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AATCCCGATAACAGATGGCCGACTTAATCTAGGAACGTGGCAG GGGATATGGTTGTGTGAGCACCGCGACCACGGAGGTGCGCGGAAGGTGGTTEST: gi|7583218|gb|AW699382.1|AW699382
genomic: AATCCCGATAACAGATGGCCGACTTAATCTAGGAACGTGGCAGgttatttctg ... tgttttttagGGGATATGGTTGTGTGAGCACCGCGACCACGGAGGTGCGCGGAAGGTGGTT
EST: AATCCCGATAACAGATGGCCGACTTAATCTAGGAACGTGGCAG GGGATATGGTTGTGTGAGCACCGCGACCACGGAGGTGCGCGGAAGGTGGTTEST: gi|7583970|gb|AW699870.1|AW699870
genomic: AATCCCGATAACAGATGGCCGACTTAATCTAGGAACGTGGCAGgttatttctg ... tgttttttagGGGATATGGTTGTGTGAGCACCGCGACCACGGAGGTGCGCGGAAGGTGGTT
EST: AATCCCGATAACAGATGGCCGACTTAATCTAGGAACGTGGCAG GGGATATGGTTGTGTGAGCACCGCGACCACGGAGGTGCGCGGAAGGTGGTTEST: gi|162267551|gb|FC444302.1|FC444302
genomic: AATCCCGATAACAGATGGCCGACTTAATCTAGGAACGTGGCAGgttatttctg ... tgttttttagGGGATATGGTTGTGTGAGCACCGCGACCACGGAGGTGCGCGGAAGGTGGTT
EST: AATCCCGATAACAGATGGCCGACTTAATCTAGGAACGTGGCAG GGGATATGGTTGTGTGAGCACCGCGACCACGGAGGTGCGCGGAAGGTGGTTEST: gi|15327404|gb|BI488043.1|BI488043
genomic: AATCCCGATAACAGATGGCCGACTTAATCTAGGAACGTGGCAGgttatttctg ... tgttttttagGGGATATGGTTGTGTGAGCACCGCGACCACGGAGGTGCGCGGAAGGTGGTT
EST: AATCCCGATAACAGATGGCCGACTTAATCTAGGAACGTGGCAG GGGATATGGTTGTGTGAGCACCGCGACCACGGAGGTGCGCGGAAGGTGGTTEST: gi|18336855|gb|BJ168878.1|BJ168878
genomic: AATCCCGATAACAGATGGCCGACTTAATCTAGGAACGTGGCAGgttatttctg ... tgttttttagGGGATATGGTTGTGTGAGCACCGCGACCACGGAGGTGCGCGGAAGGTGGTT
EST: AGTCCCGATAACAGATGGCCGACTTAATCTAGGAACGTGGCAG GGGATATGGTTGTGTGAGCACCGCGACCACGGAGGTGCGCGGAAGGTGGTT
genomic: AATCCCGATAACAGATGGCCGACTTAATCTAGGAACGTGGCAGgttatttctg ... tgttttttagGGGATATGGTTGTGTGAGCACCGCGACCACGGAGGTGCGCGGAAGGTGGTT
cgattaagatagatagattctcacatatttgttgtacttggaacttgttttttagGGGATATGGTTGTGTGAGCACCGCGACCACGGAGGTGCGCGGAAGGTGGTTATCACCATGACTGGAGTTTAGAGATTTCCCCCAAAGTCCTTCTAGTCTG
ttctcac putative branch site (score: 3)
cttgtttttt putative PPT
ttgtttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaagattatggtcacatgtgtcacttgtgaggaattgcagtcttcgattaagatagatagattctcacatatttgttgtacttggaacttgttttttagGGGATATGGTTGTGTGAGCACCGCGACCACGGAGGTGCGCGGAAGGTGGTTATCACCATGACTGGAGTTTAGAGATTTCCCCCAAAGTCCTTCTAGTCTG
- - - - - - -cacatgt