1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtcgcattcgtttagtgcagcctctggatatgttttagtgaattgcattattgtgtttgagatactattctcgcttttaatttatgttttcaacattcttgtttgagttaagcatcgtctattctggttatgaatcgcaaacatgctgttcgctatgaataacgccccataattcgtactttactgtagGGAAGAAAAGCTCCTTGGAAACACACGATGGAAG
species | Physcomitrella patens |
transcript | PP1S397_39V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCGATGTCCGCGATGATGTTGAAACTTGGCTGAATTTGACGGTACCAGAG GGAAGAAAAGCTCCTTGGAAACACACGATGGAAGEST: gi|7583218|gb|AW699382.1|AW699382
genomic: GCGATGTCCGCGATGATGTTGAAACTTGGCTGAATTTGACGGTACCAGAGgtaagtcgca ... tttactgtagGGAAGAAAAGCTCCTTGGAAACACACGATGGAAG
EST: GTTGAAACTTGGCTGAATTTGACGGTACCAGAG GGAAGAAAAGCTCCTTGGAAACACACGATGGAAGEST: gi|162267551|gb|FC444302.1|FC444302
genomic: GTTGAAACTTGGCTGAATTTGACGGTACCAGAGgtaagtcgca ... tttactgtagGGAAGAAAAGCTCCTTGGAAACACACGATGGAAG
EST: GCGATGTCCGCGATGATGTTGAAACTTGGCTGAATTTGACGGTACCAGAG GGAAGAAAAGCTCCTTGGAAACACACGATGGAAGEST: gi|15327404|gb|BI488043.1|BI488043
genomic: GCGATGTCCGCGATGATGTTGAAACTTGGCTGAATTTGACGGTACCAGAGgtaagtcgca ... tttactgtagGGAAGAAAAGCTCCTTGGAAACACACGATGGAAG
EST: TTGAAACTTGGCTGAATTTGACGGTACCAGAG GGAAGAAAAGCTCCTTGGAAACACACGATGGAAGEST: gi|18365047|gb|BJ197121.1|BJ197121
genomic: TTGAAACTTGGCTGAATTTGACGGTACCAGAGgtaagtcgca ... tttactgtagGGAAGAAAAGCTCCTTGGAAACACACGATGGAAG
EST: GCGATGTCCGCGATGATGTTGAAACTTGGCTGAATTTGACGGTACCAGAG GGAAGAAAAGCTCCTTGGAAACACACGATGGAAGEST: gi|18336855|gb|BJ168878.1|BJ168878
genomic: GCGATGTCCGCGATGATGTTGAAACTTGGCTGAATTTGACGGTACCAGAGgtaagtcgca ... tttactgtagGGAAGAAAAGCTCCTTGGAAACACACGATGGAAG
EST: GCGATGTCCGCGATGATGTTGAAACTTGGCTGAATTTGACGGTACCAGAG GGAAGAAAAGCTCCTTGGAAACACACGATGGAAG
genomic: GCGATGTCCGCGATGATGTTGAAACTTGGCTGAATTTGACGGTACCAGAGgtaagtcgca ... tttactgtagGGAAGAAAAGCTCCTTGGAAACACACGATGGAAG
tcgcaaacatgctgttcgctatgaataacgccccataattcgtactttactgtagGGAAGAAAAGCTCCTTGGAAACACACGATGGAAG
gaataac putative branch site (score: 16)
ctttact putative PPT
tatgaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcgcattcgtttagtgcagcctctggatatgttttagtgaattgcattattgtgtttgagatactattctcgcttttaatttatgttttcaacattcttgtttgagttaagcatcgtctattctggttatgaatcgcaaacatgctgttcgctatgaataacgccccataattcgtactttactgtagGGAAGAAAAGCTCCTTGGAAACACACGATGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG