1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGTGGTCCGCTCCAAACTATTGCTACAGATGTGGAAATGTTGCTTCAATCTTAAGCTTCAACGAAAATATGgtaggtttcatatctttgacgttctggtcatgatatccaacgctatcattcttgttgttaggatttaatgttcctttgcaatgcgacgtacatatcacatgcatgtcaactgacattaatcaagttgacttctgatattgttactgatgtgattctgacatcgcag
species | Physcomitrella patens |
transcript | PP1S207_36V6.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCTACAGATGTGGAAATGTTGCTTCAATCTTAAGCTTCAACGAAAATATG GAGAGAGATGTGAAATTTTTTACTGAGACCGAGGAGAACCAGGCTATAATGEST: gi|37833739|gb|BJ591751.1|BJ591751
genomic: GCTACAGATGTGGAAATGTTGCTTCAATCTTAAGCTTCAACGAAAATATGgtaggtttca ... gacatcgcagGAGAGAGATGTGAAATTTTTTACTGAGACCGAGGAGAACCAGGCTATGATG
EST: CTACAGATGTGGAAATGTTGCTTCAATCTTAAGCTTCAACGAAAATATG GAGAGAGATGTGAAATTTTTTACTGAGACCGAGGAGAACCAGGCTATGATGEST: gi|18334335|gb|BJ166352.1|BJ166352
genomic: CTACAGATGTGGAAATGTTGCTTCAATCTTAAGCTTCAACGAAAATATGgtaggtttca ... gacatcgcagGAGAGAGATGTGAAATTTTTTACTGAGACCGAGGAGAACCAGGCTATGATG
EST: GCTACAGATGTGGAAATGTTGCTTCAATCTTAAGCTTCAACGAAAATATG GAGAGAGATGTGAAATTTTTTACTGAGACCGAGGAGAACCAGGCTATGATGEST: gi|208366403|gb|DC947585.1|DC947585
genomic: GCTACAGATGTGGAAATGTTGCTTCAATCTTAAGCTTCAACGAAAATATGgtaggtttca ... gacatcgcagGAGAGAGATGTGAAATTTTTTACTGAGACCGAGGAGAACCAGGCTATGATG
EST: GCTACAGATGTGGAAATGTTGCTTCAATCTTAAGCTTCAACGAAAATATG GAGAGAGATGTGAAATTTTTTACTGAGACCGAGGAGAACCAGGCTATGATGEST: gi|208358797|gb|DC957625.1|DC957625
genomic: GCTACAGATGTGGAAATGTTGCTTCAATCTTAAGCTTCAACGAAAATATGgtaggtttca ... gacatcgcagGAGAGAGATGTGAAATTTTTTACTGAGACCGAGGAGAACCAGGCTATGATG
EST: GCTACAGATGTGGAAATGTTGCTTCAATCTTAAGCTTCAACGAAAATATG GAGAGAGATGTGAAATTTTTTACTGAGACCGAGGAGAACCAGGCTATGATGEST: gi|208362791|gb|DC950591.1|DC950591
genomic: GCTACAGATGTGGAAATGTTGCTTCAATCTTAAGCTTCAACGAAAATATGgtaggtttca ... gacatcgcagGAGAGAGATGTGAAATTTTTTACTGAGACCGAGGAGAACCAGGCTATGATG
EST: GCTACAGATGTGGAAATGTTGCTTCAATCTTAAGCTTCAACGAAAATATG GAGAGAGATGTGAAATTTTTTACTGAGACCGAGGAGAACCAGGCTATGATGEST: gi|37825666|gb|BJ583732.1|BJ583732
genomic: GCTACAGATGTGGAAATGTTGCTTCAATCTTAAGCTTCAACGAAAATATGgtaggtttca ... gacatcgcagGAGAGAGATGTGAAATTTTTTACTGAGACCGAGGAGAACCAGGCTATGATG
EST: GCTACAGATGTGGAAATGTTGCTTCAATCTTAAGCTTCAACGAAAATATG GAGAGAGATGTGAAATTTTTTACTGAGACCGAGGAGAACCAGGCTATGATGEST: gi|37829309|gb|BJ587321.1|BJ587321
genomic: GCTACAGATGTGGAAATGTTGCTTCAATCTTAAGCTTCAACGAAAATATGgtaggtttca ... gacatcgcagGAGAGAGATGTGAAATTTTTTACTGAGACCGAGGAGAACCAGGCTATGATG
EST: GCTACAGATGTGGAAATGTTGCTTCAATCTTAAGCTTCAACGAAAATATG GAGAGAGATGTGAAATTTTTTACTGAGACCGAGGAGAACCAGGCTATGATGEST: gi|37821893|gb|BJ579959.1|BJ579959
genomic: GCTACAGATGTGGAAATGTTGCTTCAATCTTAAGCTTCAACGAAAATATGgtaggtttca ... gacatcgcagGAGAGAGATGTGAAATTTTTTACTGAGACCGAGGAGAACCAGGCTATGATG
EST: GCTACAGATGTGGAAATGTTGCTTCAATCTTAAGCTTCAACGAAAATATG GAGAGAGATGTGAAATTTTTTACTGAGACCGAGGAGAACCAGGCTATGATGEST: gi|162174229|gb|FC350612.1|FC350612
genomic: GCTACAGATGTGGAAATGTTGCTTCAATCTTAAGCTTCAACGAAAATATGgtaggtttca ... gacatcgcagGAGAGAGATGTGAAATTTTTTACTGAGACCGAGGAGAACCAGGCTATGATG
EST: GCTACAGATGTGGAAATGTTGCTTCAATCTTAAGCTTCAACGAAAATATG GAGAGAGATGTGAAATTTTTTACTGAGACCGAGGAGAACCAGGCTATGATG
genomic: GCTACAGATGTGGAAATGTTGCTTCAATCTTAAGCTTCAACGAAAATATGgtaggtttca ... gacatcgcagGAGAGAGATGTGAAATTTTTTACTGAGACCGAGGAGAACCAGGCTATGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTGGTCCGCTCCAAACTATTGCTACAGATGTGGAAATGTTGCTTCAATCTTAAGCTTCAACGAAAATATGgtaggtttcatatctttgacgttctggtcatgatatccaacgctatcattcttgttgttaggatttaatgttcctttgcaatgcgacgtacatatcacatgcatgtcaactgacattaatcaagttgacttctgatattgttactgatgtgattctgacatcgcag
- - - - - - - - - - - - - CAGATG