1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tctaatgctagtgtatgtgttcgtattgtgtaaaccctctgctttagatatttagtttaagtttcgtgtctatgttgctctgatgtgggtagtattgcagTTCAATCACATAAACGGATTGGAGCTTGTATGCCGTGCGCATCAATTAGTTCAAGAGGGATTGAAGTACATGTTTCCTGACAAAGGACTTGTCACG
species | Physcomitrella patens |
transcript | PP1S207_36V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTAGCCCACGAGGTGCTGGGTGGCTTTTTGGTGCACGCGTTACCTCTGAG TTCAATCACATAAACGGATTGGAGCTTGTATGCCGTGCGCATCAATTAGTTEST: gi|162174230|gb|FC350613.1|FC350613
genomic: TTAGCCCACGAGGTGCTGGGTGGCTTTTTGGTGCACGCGTTACCTCTGAGgcatgctctc ... agtattgcagTTCAATCACATAAACGGATTGGAGCTTGTATGCCGTGCGCATCAATTAGTT
EST: TAGCCCACGAGGTGCTGGGTGGCTTTTTGGTGCACGCGTTACCTCTGAAG T-CAATCACATAAACGGATTGGAGCTTGTATGCCGTGCGCATCAATTAGTEST: gi|100381804|gb|BY950182.1|BY950182
genomic: TAGCCCACGAGGTGCTGGGTGGCTTTTTGGTGCACGCGTTACCTCTGA-Ggcatgctctc ... agtattgcagTTCAATCACATAAACGGATTGGAGCTTGTATGCCGTGCGCATCAATTAGT
EST: TTAGCCCACGAGGTGCTGGGTGGCTTTTTGGTGCACGCGTTACCTCTGAG TTTCA-TCACATAAACGGATTGAAGCTTGTATGCCGTGCGCATCA-TTNAGEST: gi|208358797|gb|DC957625.1|DC957625
genomic: TTAGCCCACGAGGTGCTGGGTGGCTTTTTGGTGCACGCGTTACCTCTGAGgcatgctctc ... agtattgcagTT-CAATCACATAAACGGATTGGAGCTTGTATGCCGTGCGCATCAATT-AG
EST: TTAGCCCACGAGGTGCTGGGTGGCTTTTTGGTGCACGCGTTACCTCTGAG TTCAATCACATAAACGGATTGGAGCTTGTATGCCGTGCGCATCAATTAGTTEST: gi|208362791|gb|DC950591.1|DC950591
genomic: TTAGCCCACGAGGTGCTGGGTGGCTTTTTGGTGCACGCGTTACCTCTGAGgcatgctctc ... agtattgcagTTCAATCACATAAACGGATTGGAGCTTGTATGCCGTGCGCATCAATTAGTT
EST: TTAGCCCACGAGGTGCTGGGTGGCTTTTTGGTGCACGCGTTACCTCTGAG TTCAATCACATAAACGGATTGGAGCTTGTATGCCGTGCGCATCAATTAGTT
genomic: TTAGCCCACGAGGTGCTGGGTGGCTTTTTGGTGCACGCGTTACCTCTGAGgcatgctctc ... agtattgcagTTCAATCACATAAACGGATTGGAGCTTGTATGCCGTGCGCATCAATTAGTT
agatatttagtttaagtttcgtgtctatgttgctctgatgtgggtagtattgcagTTCAATCACATAAACGGATTGGAGCTTGTATGCCGTGCGCATCAATTAGTTCAAGAGGGATTGAAGTACATGTTTCCTGACAAAGGACTTGTCACG
ctctgat putative branch site (score: 4)
tttagtttaagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctaatgctagtgtatgtgttcgtattgtgtaaaccctctgctttagatatttagtttaagtttcgtgtctatgttgctctgatgtgggtagtattgcagTTCAATCACATAAACGGATTGGAGCTTGTATGCCGTGCGCATCAATTAGTTCAAGAGGGATTGAAGTACATGTTTCCTGACAAAGGACTTGTCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG