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GGGGACTGGACACAACGTGATGGACTTAGATCAGTGGCTTGAGAAAGTGAAGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATATgtaagtgcggaaactctgctcggggttcgttacttgtggagtgttggcgtggttatgtctacgtgatgtttggatctgctgctccatcatttaggtgtcg...
species | Physcomitrella patens |
transcript | PP1S207_36V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATAT GTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCCEST: gi|18326416|gb|BJ158415.1|BJ158415
genomic: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATATgtaagtgcgg ... ttcatcgcagGTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCC
EST: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATAT GTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCCEST: gi|100389837|gb|BY971189.1|BY971189
genomic: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATATgtaagtgcgg ... ttcatcgcagGTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCC
EST: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATAT GTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCCEST: gi|100386396|gb|BY951192.1|BY951192
genomic: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATATgtaagtgcgg ... ttcatcgcagGTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCC
EST: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATAT GTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCCEST: gi|18356799|gb|BJ188858.1|BJ188858
genomic: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATATgtaagtgcgg ... ttcatcgcagGTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCC
EST: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATAT GTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCCEST: gi|18346558|gb|BJ178603.1|BJ178603
genomic: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATATgtaagtgcgg ... ttcatcgcagGTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCC
EST: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATAT GTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCCEST: gi|162174230|gb|FC350613.1|FC350613
genomic: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATATgtaagtgcgg ... ttcatcgcagGTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCC
EST: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATAT GTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCCEST: gi|18330758|gb|BJ162764.1|BJ162764
genomic: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATATgtaagtgcgg ... ttcatcgcagGTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCC
EST: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATAT GTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCCEST: gi|208389011|gb|DC937344.1|DC937344
genomic: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATATgtaagtgcgg ... ttcatcgcagGTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCC
EST: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATAT GTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCCEST: gi|18342747|gb|BJ174782.1|BJ174782
genomic: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATATgtaagtgcgg ... ttcatcgcagGTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCC
EST: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATAT GTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCCEST: gi|208390592|gb|DC937524.1|DC937524
genomic: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATATgtaagtgcgg ... ttcatcgcagGTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCC
EST: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATAT GTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCCEST: gi|18354446|gb|BJ186502.1|BJ186502
genomic: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATATgtaagtgcgg ... ttcatcgcagGTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCC
EST: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATAT GTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCCEST: gi|100352556|gb|BY945331.1|BY945331
genomic: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATATgtaagtgcgg ... ttcatcgcagGTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCC
EST: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATAT GTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCCEST: gi|100353825|gb|BY983329.1|BY983329
genomic: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATATgtaagtgcgg ... ttcatcgcagGTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCC
EST: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATAT GTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCCEST: gi|208387516|gb|DC933379.1|DC933379
genomic: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATATgtaagtgcgg ... ttcatcgcagGTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCC
EST: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATAT GTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCC
genomic: AGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATATgtaagtgcgg ... ttcatcgcagGTGAAAGAAATATTGGTGGAGGAATCCAATGTTCAGCCTGTCAACAGTCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGACTGGACACAACGTGATGGACTTAGATCAGTGGCTTGAGAAAGTGAAGAGCGGCAACTACCTCTTGGAAGACGAGCTCAAGCAACTATGTGAATATgtaagtgcggaaactctgctcggggttcgttacttgtggagtgttggcgtggttatgtctacgtgatgtttggatctgctgctccatcatttaggtgtcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA