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...ctacaatgtgctgagtctagtcaatcttttaattcgtggattttgtcttgcttcattatggatgaatttgaaaagtttcactttctcataatgtgtgcagATTAGGGTGATAGAGAGGCAGTGTGAGATTCCTCATGAAGGGCCATTCTGTGACTTGATGTGGAGTGATCCTGAGGATATCGAAACTTGGGCTGTTAGCC
species | Physcomitrella patens |
transcript | PP1S207_36V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTTGTGTGTTCATGAAGGTCTGTCTCCAGACATTCGGACAATTGATCAG ATTAGGGTGATAGAGAGGCAGTGTGAGATTCCTCATGAAGGGCCATTCTGTEST: gi|100386396|gb|BY951192.1|BY951192
genomic: TGTTGTGTGTTCATGGAGGTCTGTCTCCAGACATTCGGACAATTGATCAGgtaagcgtta ... atgtgtgcagATTAGGGTGATAGAGAGGCAGTGTGAGATTCCTCATGAAGGGCCATTCTGT
EST: GTTGTGTGTTCATGGAGGTCTGTCTCCAGACATTCGGAACA-TTGATCAG ATTAGGGTGATAGAGAGGCAGTGTGAGATTCCTCATGAAGGGGCATTCTGTEST: gi|162174230|gb|FC350613.1|FC350613
genomic: GTTGTGTGTTCATGGAGGTCTGTCTCCAGACATTCGGA-CAATTGATCAGgtaagcgtta ... atgtgtgcagATTAGGGTGATAGAGAGGCAGTGTGAGATTCCTCATGAAGGGCCATTCTGT
EST: TGTTGTGTGTTCATGGAGGTCTGTCTCCAGACATTCGGACAATTGATCAG ATTAGGGTGATAGAGAGGCAGTGTGAGATTCCTCATGAAGGGCCATTCTGTEST: gi|100381804|gb|BY950182.1|BY950182
genomic: TGTTGTGTGTTCATGGAGGTCTGTCTCCAGACATTCGGACAATTGATCAGgtaagcgtta ... atgtgtgcagATTAGGGTGATAGAGAGGCAGTGTGAGATTCCTCATGAAGGGCCATTCTGT
EST: TGTTGTGTGTTCATGGAGGTCTGTCTCCAGACATTCGGACAATTGATCAG ATTAGGGTGATAGAGAGGCAGTGTGAGATTCCTCATGAAGGGCCATTCTGTEST: gi|208358797|gb|DC957625.1|DC957625
genomic: TGTTGTGTGTTCATGGAGGTCTGTCTCCAGACATTCGGACAATTGATCAGgtaagcgtta ... atgtgtgcagATTAGGGTGATAGAGAGGCAGTGTGAGATTCCTCATGAAGGGCCATTCTGT
EST: GTTGTGTGTTCATGGAGGTCTGTCTCCCAGACATTCGGACAATTGATCAG ATTAGGGTGATAGAGAGGCAGTGTGAGATTCCTCATGAAGGGCCATTCTGTEST: gi|208362791|gb|DC950591.1|DC950591
genomic: GTTGTGTGTTCATGGAGGTCTGTCT-CCAGACATTCGGACAATTGATCAGgtaagcgtta ... atgtgtgcagATTAGGGTGATAGAGAGGCAGTGTGAGATTCCTCATGAAGGGCCATTCTGT
EST: TGTTGTGTGTTCATGGAGGTCTGTCTCCAGACATTCGGACAATTGATCAG ATTAGGGTGATAGAGAGGCAGTGTGAGATTCCTCATGAAGGGCCATTCTGTEST: gi|100352556|gb|BY945331.1|BY945331
genomic: TGTTGTGTGTTCATGGAGGTCTGTCTCCAGACATTCGGACAATTGATCAGgtaagcgtta ... atgtgtgcagATTAGGGTGATAGAGAGGCAGTGTGAGATTCCTCATGAAGGGCCATTCTGT
EST: TGTTGTGTGTTCATGGAGGTCTGTCTCCAGACATTCGGACNATTGATCAG ATTAGGNTGATAGAGAGGCAGTGTGAGAT-CCNTCATGAAGGGC-ATTCTG
genomic: TGTTGTGTGTTCATGGAGGTCTGTCTCCAGACATTCGGACAATTGATCAGgtaagcgtta ... atgtgtgcagATTAGGGTGATAGAGAGGCAGTGTGAGATTCC-TCATGAAGGGCCATTCTG
tcttgcttcattatggatgaatttgaaaagtttcactttctcataatgtgtgcagATTAGGGTGATAGAGAGGCAGTGTGAGATTCCTCATGAAGGGCCATTCTGTGACTTGATGTGGAGTGATCCTGAGGATATCGAAACTTGGGCTGTTAGCC
aatttgaaaagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctacaatgtgctgagtctagtcaatcttttaattcgtggattttgtcttgcttcattatggatgaatttgaaaagtttcactttctcataatgtgtgcagATTAGGGTGATAGAGAGGCAGTGTGAGATTCCTCATGAAGGGCCATTCTGTGACTTGATGTGGAGTGATCCTGAGGATATCGAAACTTGGGCTGTTAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT