1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgtatggtaagcctgaagagcagttttatacgccgtcacatggagtgttagcttaatctggtactaacaggagtttactgtattttgaaacattgtgcagATAGCTGAGAACCTAGCGCAGCTCATGTACAGCGTGATGATGACTGGATACATGTTCAGGAACGCTCAGTATCGACTAGAATTGCAACAGAGCTTGAGCC
species | Physcomitrella patens |
transcript | PP1S207_10V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATATGCTGGGTACTCTTCCACCGCAGTTTTTTGATATTCATGTCTCGACA ATAGCTGAGAACCTAGCGCAGCTCATGTACAGCGTGATGATGACTGGATACEST: gi|208361261|gb|DC957730.1|DC957730
genomic: ATATGCTGGGTACTCTTCCACCGCAGTTTTTTGATATTCATGTCTCGACAgtaagcttcg ... cattgtgcagATAGCTGAGAACCTAGCGCAGCTCATGTACAGCGTGATGATGACTGGATAC
EST: ATATGCTGGGTACTCTTCCACCGCAGTTTTTTGATATTCATGTCTCGACA ATAGCTGAGAACCTAGCGCAGCTCATGTACAGCGTGATGATGACTGGATACEST: gi|162265320|gb|FC440438.1|FC440438
genomic: ATATGCTGGGTACTCTTCCACCGCAGTTTTTTGATATTCATGTCTCGACAgtaagcttcg ... cattgtgcagATAGCTGAGAACCTAGCGCAGCTCATGTACAGCGTGATGATGACTGGATAC
EST: ATATGCTGGGTACTCTTCCACCGCAGTTTTTTGATATTCATGTCTCGACA ATAGCTGAGAACCTAGCGCAGCTCATGTACAGCGTGATGATGACTGGATACEST: gi|162178753|gb|FC354503.1|FC354503
genomic: ATATGCTGGGTACTCTTCCACCGCAGTTTTTTGATATTCATGTCTCGACAgtaagcttcg ... cattgtgcagATAGCTGAGAACCTAGCGCAGCTCATGTACAGCGTGATGATGACTGGATAC
EST: ATATGCTGGGTACTCTTCCACCGCAGTTTTTTGATATTCATGTCTCGACA ATAGCTGAGAACCTAGCGCAGCTCATGTACAGCGTGATGATGACTGGATAC
genomic: ATATGCTGGGTACTCTTCCACCGCAGTTTTTTGATATTCATGTCTCGACAgtaagcttcg ... cattgtgcagATAGCTGAGAACCTAGCGCAGCTCATGTACAGCGTGATGATGACTGGATAC
tgttagcttaatctggtactaacaggagtttactgtattttgaaacattgtgcagATAGCTGAGAACCTAGCGCAGCTCATGTACAGCGTGATGATGACTGGATACATGTTCAGGAACGCTCAGTATCGACTAGAATTGCAACAGAGCTTGAGCC
tactaac putative branch site (score: 0)
tattttgaaacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtatggtaagcctgaagagcagttttatacgccgtcacatggagtgttagcttaatctggtactaacaggagtttactgtattttgaaacattgtgcagATAGCTGAGAACCTAGCGCAGCTCATGTACAGCGTGATGATGACTGGATACATGTTCAGGAACGCTCAGTATCGACTAGAATTGCAACAGAGCTTGAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT