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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAAAAGCCGGAGAGACATGCTGCAGGAGTATGTGAAGAATGTGCAACCAGAATTTATGGAGCGCTTCGTTCAGAAAGCTCCTGCTCAGgtagatcatttttgcttcgtggcttttcgggccgaagcggttacttggcgccgagtcttacgtggttctattgctgtttcctgtttggctgtgcttattt...

Basic information

species Physcomitrella patens
transcript PP1S207_10V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162262190|gb|FC437101.1|FC437101
EST:     ATGTGCAACCAGAATTTATGGAGCGCTTCGTTCAGAAAGCTCCTGCTCAG                         GTAGTAGAAGCCATGCGTCAAACCGTGACCAATATGCTGGGTACTCTTCCA
genomic: ATGTGCAACCAGAATTTATGGAGCGCTTCGTTCAGAAAGCTCCTGCTCAGgtagatcatt ... ttgccggcagGTAGTAGAAGCCATGCGTCAAACCGTGACCAATATGCTGGGTACTCTTCCA
EST: gi|208361261|gb|DC957730.1|DC957730
EST:     ATGTGCAACCAGAATTTATGGAGCGCTTCGTTCAGAAAGCTCCTGCTCAG                         GTAGTAGAAGCCATGCGTCAAACCGTGACCAATATGCTGGGTACTCTTCCA
genomic: ATGTGCAACCAGAATTTATGGAGCGCTTCGTTCAGAAAGCTCCTGCTCAGgtagatcatt ... ttgccggcagGTAGTAGAAGCCATGCGTCAAACCGTGACCAATATGCTGGGTACTCTTCCA
EST: gi|162265320|gb|FC440438.1|FC440438
EST:     ATGTGCAACCAGAATTTATGGAGCGCTTCGTTCAGAAAGCTCCTGCTCAG                         GTAGTAGAAGCCATGCGTCAAACCGTGACCAATATGCTGGGTACTCTTCCA
genomic: ATGTGCAACCAGAATTTATGGAGCGCTTCGTTCAGAAAGCTCCTGCTCAGgtagatcatt ... ttgccggcagGTAGTAGAAGCCATGCGTCAAACCGTGACCAATATGCTGGGTACTCTTCCA
EST: gi|162178753|gb|FC354503.1|FC354503
EST:     ATGTGCAACCAGAATTTATGGAGCGCTTCGTTCAGAAAGCTCCTGCTCAG                         GTAGTAGAAGCCATGCGTCAAACCGTGACCAATATGCTGGGTACTCTTCCA
genomic: ATGTGCAACCAGAATTTATGGAGCGCTTCGTTCAGAAAGCTCCTGCTCAGgtagatcatt ... ttgccggcagGTAGTAGAAGCCATGCGTCAAACCGTGACCAATATGCTGGGTACTCTTCCA