1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAGTGGAGGAGGCAGCGACAGCAGCGGGAATGGGGATGCGGAGAGCAGCGACGAGGTGGCGTCTGTGGAGAGTGATGCGGCTGCGAATGTAGATTCCGCTgtgagtgttggtatcgtaggagttttttgaacaattttggaatctcggggtttattgaaattgggggagcggagaggattggaggaatttgtgtgagttt...
species | Physcomitrella patens |
transcript | PP1S207_10V6.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGAGTGATGCGGCTGCGAATGTAGATTCCGCT TACAAAAGCCGGAGAGACATGCTGCAGGAGTATGTGAAGAATGTGCAACCAEST: gi|162265320|gb|FC440438.1|FC440438
genomic: GAGAGTGATGCGGCTGCGAATGTAGATTCCGCTgtgagtgttg ... accgttgcagTACAAAAGCCGGAGAGACATGCTGCAGGAGTATGTGAAGAATGTGCAACCA
EST: ACGAGGTGGCGTCTGTGGAGAGTGATGCGGCTGCGAATGTAGATTCCGCT TACAAAAGCCGGAGAGACATGCTGCAGGAGTATGTGAAGAATGTGCAACCAEST: gi|162178753|gb|FC354503.1|FC354503
genomic: ACGAGGTGGCGTCTGTGGAGAGTGATGCGGCTGCGAATGTAGATTCCGCTgtgagtgttg ... accgttgcagTACAAAAGCCGGAGAGACATGCTGCAGGAGTATGTGAAGAATGTGCAACCA
EST: ACGAGGTGGCGTCTGTGGAGAGTGATGCGGCTGCGAATGTAGATTCCGCT TACAAAAGCCGGAGAGACATGCTGCAGGAGTATGTGAAGAATGTGCAACCA
genomic: ACGAGGTGGCGTCTGTGGAGAGTGATGCGGCTGCGAATGTAGATTCCGCTgtgagtgttg ... accgttgcagTACAAAAGCCGGAGAGACATGCTGCAGGAGTATGTGAAGAATGTGCAACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTGGAGGAGGCAGCGACAGCAGCGGGAATGGGGATGCGGAGAGCAGCGACGAGGTGGCGTCTGTGGAGAGTGATGCGGCTGCGAATGTAGATTCCGCTgtgagtgttggtatcgtaggagttttttgaacaattttggaatctcggggtttattgaaattgggggagcggagaggattggaggaatttgtgtgagttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA