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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgttgaattatcatagcggggttttgagtgtatggttattgggagggctattttgggcctgtcggagttgagggttttaaatttgtgaaaccgttgcagTACAAAAGCCGGAGAGACATGCTGCAGGAGTATGTGAAGAATGTGCAACCAGAATTTATGGAGCGCTTCGTTCAGAAAGCTCCTGCTCAG

Basic information

species Physcomitrella patens
transcript PP1S207_10V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208361261|gb|DC957730.1|DC957730
EST:     GAGAGTGATGCGGCTGCGAATGTAGATTCCGCT                         TACAAAAGCCGGAGAGACATGCTGCAGGAGTATGTGAAGAATGTGCAACCA
genomic: GAGAGTGATGCGGCTGCGAATGTAGATTCCGCTgtgagtgttg ... accgttgcagTACAAAAGCCGGAGAGACATGCTGCAGGAGTATGTGAAGAATGTGCAACCA
EST: gi|162265320|gb|FC440438.1|FC440438
EST:     ACGAGGTGGCGTCTGTGGAGAGTGATGCGGCTGCGAATGTAGATTCCGCT                         TACAAAAGCCGGAGAGACATGCTGCAGGAGTATGTGAAGAATGTGCAACCA
genomic: ACGAGGTGGCGTCTGTGGAGAGTGATGCGGCTGCGAATGTAGATTCCGCTgtgagtgttg ... accgttgcagTACAAAAGCCGGAGAGACATGCTGCAGGAGTATGTGAAGAATGTGCAACCA
EST: gi|162178753|gb|FC354503.1|FC354503
EST:     ACGAGGTGGCGTCTGTGGAGAGTGATGCGGCTGCGAATGTAGATTCCGCT                         TACAAAAGCCGGAGAGACATGCTGCAGGAGTATGTGAAGAATGTGCAACCA
genomic: ACGAGGTGGCGTCTGTGGAGAGTGATGCGGCTGCGAATGTAGATTCCGCTgtgagtgttg ... accgttgcagTACAAAAGCCGGAGAGACATGCTGCAGGAGTATGTGAAGAATGTGCAACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggctattttgggcctgtcggagttgagggttttaaatttgtgaaaccgttgcagTACAAAAGCCGGAGAGACATGCTGCAGGAGTATGTGAAGAATGTGCAACCAGAATTTATGGAGCGCTTCGTTCAGAAAGCTCCTGCTCAG
                              ttttaaatttgtgaaa  TA-rich tract