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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttattttgcatctctaatcctactcagttgaatcgtagatttccatcgctaccgtaggaaaaaaattgagttttagttcatacctgctagcacaagtttgttatgtaatttcgcaatttctctcgttcaacttctgtggcttttgatcaggcttgttgtttgtttacagGTTTTGATAGGTCACACTGACAATGCTGAATTCGCTTTGAACGTAAGTCGAACTGCTCCTTACGTCATATCAGGAG

Basic information

species Physcomitrella patens
transcript PP1S206_25V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208381127|gb|DC903927.1|DC903927
EST:     AGCCAAACCGAGCTACAACATCAGCAGCGTCTGAATCAAAACCCGATCTG                         GTTTTGATAGGTCACACTGACAATGCTGAATTCGCTTTGAACGTAAGTCGA
genomic: AGCCAAACCGAGCTACAACATCAGCAGCGTCTGAATCAAAACCCGATCTGgttattttgc ... ttgtttacagGTTTTGATAGGTCACACTGACAATGCTGAATTCGCTTTGAACGTAAGTCGA
EST: gi|162192559|gb|FC370606.1|FC370606
EST:     AGCCAAACCGAGCTACAACATCAGCAGCGTCTGAATCAAAACCCGATCTG                         GTTTTGATAGGTCACACTGACAATGCTGAATTCGCTTTGAACGTAAGTCGA
genomic: AGCCAAACCGAGCTACAACATCAGCAGCGTCTGAATCAAAACCCGATCTGgttattttgc ... ttgtttacagGTTTTGATAGGTCACACTGACAATGCTGAATTCGCTTTGAACGTAAGTCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttctctcgttcaacttctgtggcttttgatcaggcttgttgtttgtttacagGTTTTGATAGGTCACACTGACAATGCTGAATTCGCTTTGAACGTAAGTCGAACTGCTCCTTACGTCATATCAGGAG
                          ttttgat  putative branch site (score: 4)
                                            tttgttt  putative PPT
                                            tttgttta  TA-rich tract