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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tacgtttctgttaattcgtttctttgttaacatttggctcggtaaaagctccattattggctcttatctttcatttatggatatattgtgtctcaatcagGTTGTGAAGGCTCACAATGCGGACCTCCACTGTGTCGATTGGAATGCTCATGACGAGAATCTTATTTTAACTGG

Basic information

species Physcomitrella patens
transcript PP1S206_25V6.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208352860|gb|DC917824.1|DC917824
EST:     TTTGCCTCCTCTTGTGGGATGCTCGCACTGGATACCAACCAATATCGAAG                         GTTGTGAAGGCTCACAATGCGGACNTCCACTGTGTCGATTGGAATGCTCAT
genomic: CTTGCCTCCTCTTGTGGGATGCTCGCACTGGATACCAACCAATATCGAAGgttagcacat ... tctcaatcagGTTGTGAAGGCTCACAATGCGGACCTCCACTGTGTCGATTGGAATGCTCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagctccattattggctcttatctttcatttatggatatattgtgtctcaatcagGTTGTGAAGGCTCACAATGCGGACCTCCACTGTGTCGATTGGAATGCTCATGACGAGAATCTTATTTTAACTGG
                  ttatctttcatttat  TA-rich tract