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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcaaatacatcacacttctaatcgtatgccaatctgtcatatgacgacgacataaaagtaacgttatgacgtgttgcacagtgacaacagtaatttggttggacagtttctaccttacttttgaattctttcttcttcataatccgtgtttcttatatttgcagATTTGGAGAATGATAGACTTCATTTACAGGCCTGAAGACGAAGTTTTGGCAGAACTTGACGAAGTGCGACCTCAATTGGTGTCTCAAAACACCCCTGCCA

Basic information

species Physcomitrella patens
transcript PP1S206_25V6.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37844406|gb|BJ602414.1|BJ602414
EST:     TCAGTGTGTCGGAGGATGCTAACACCCCCGGGGGTGGGGGCACTTTGCAG                         ATTTGGAGAATGATAGACTTCATTTACAGGCCTGAAGACGAAGTTTTGGCA
genomic: TCAGTGTGTCGGAGGATGCTAACACCCCCGGGGGTGGGGGCACTTTGCAGgtgcaaatac ... atatttgcagATTTGGAGAATGATAGACTTCATTTACAGGCCTGAAGACGAAGTTTTGGCA
EST: gi|37838633|gb|BJ596641.1|BJ596641
EST:     TCAGTGTGTCGGAGGATGCTAACACCCCCGGGGGTGGGGGCACTTNGCAG                         ATTNGGAGAATGATAGACTTCATTTACAGGCCTGAAGACGAAGTTTTGGCA
genomic: TCAGTGTGTCGGAGGATGCTAACACCCCCGGGGGTGGGGGCACTTTGCAGgtgcaaatac ... atatttgcagATTTGGAGAATGATAGACTTCATTTACAGGCCTGAAGACGAAGTTTTGGCA
EST: gi|208352860|gb|DC917824.1|DC917824
EST:     TCAGTGTGTCGGAGGATGCTAACACCCCCGGGGGTGGGGGCACTTTGCAG                         ATTTGGAGAATGATAGACTTCATTTACAGGCCTGAAGACGAAGTTTTGGCA
genomic: TCAGTGTGTCGGAGGATGCTAACACCCCCGGGGGTGGGGGCACTTTGCAGgtgcaaatac ... atatttgcagATTTGGAGAATGATAGACTTCATTTACAGGCCTGAAGACGAAGTTTTGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaccttacttttgaattctttcttcttcataatccgtgtttcttatatttgcagATTTGGAGAATGATAGACTTCATTTACAGGCCTGAAGACGAAGTTTTGGCAGAACTTGACGAAGTGCGACCTCAATTGGTGTCTCAAAACACCCCTGCCA
  accttac  putative branch site (score: 3)
                                       tttcttat  putative PPT
                                     tgtttcttatattt  TA-rich tract