1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCAAAAGGTTGTGCAGGACAAGAAATTGTTGGAAGTGCATGTAGAGAAAGGAATGCAGCATGGACAGAAGATCACCTTCCAGGGCGAGGCAGATGAAGCGgtacgtttcccagaacaaccacgtcaatgattatttatagttttgggatgccttagtagattgcaatgttgtggttcttcgtgattcggtattcctgaattaacacacctttgtgtgcgtcctcgtgcag
species | Physcomitrella patens |
transcript | PP1S100_36V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATGCAGCATGGACAGAAGATCACCTTCCAGGGCGAGGCAGATGAAGCG CCGGATACCATTACAGGTGACATCGTCTTTGTATTGCAACTGAAGGAGCATEST: gi|37840042|gb|BJ598050.1|BJ598050
genomic: ATGCAGCATGGACAGAAGATCACCTTCCAGGGCGAGGCAGATGAAGCGgtacgtttcc ... cctcgtgcagCCGGATACCATTACAGGTGACATCGTCTTTGTATTGCAACTGAAGGAGCAT
EST: GAATGCAGCATGGACAGAAGATCNCCTTCCAGGGCGAGGCAGATGAAGCG CCGGATACCATTACAGGTGACATCGTCTTTGTATTGCAACTGAAGGAGCATEST: gi|162221418|gb|FC397227.1|FC397227
genomic: GAATGCAGCATGGACAGAAGATCACCTTCCAGGGCGAGGCAGATGAAGCGgtacgtttcc ... cctcgtgcagCCGGATACCATTACAGGTGACATCGTCTTTGTATTGCAACTGAAGGAGCAT
EST: GAATGCAGCATGGACAGAAGATCACCTTCCAGGGCGAGGCAGATGAAGCG CCGGATACCATTACAGGTGACATCGTCTTTGTATTGCAACTGAAGGAGCATEST: gi|162194543|gb|FC370766.1|FC370766
genomic: GAATGCAGCATGGACAGAAGATCACCTTCCAGGGCGAGGCAGATGAAGCGgtacgtttcc ... cctcgtgcagCCGGATACCATTACAGGTGACATCGTCTTTGTATTGCAACTGAAGGAGCAT
EST: CTTCCAGGGCGAGGCAGATGAAGCG CCGGATACCATTACAGGTGACATCGTCTTTGTATTGCAACTGAAGGAGCATEST: gi|162167364|gb|FC343067.1|FC343067
genomic: CTTCCAGGGCGAGGCAGATGAAGCGgtacgtttcc ... cctcgtgcagCCGGATACCATTACAGGTGACATCGTCTTTGTATTGCAACTGAAGGAGCAT
EST: GAATGCAGCATGGACAGAAGATCACCTTCCAGGGCGAGGCAGATGAAGCG CCGGATACCATTACAGGTGACATCGTCTTTGTATTGCAACTGAAGGAGCATEST: gi|162258184|gb|FC433966.1|FC433966
genomic: GAATGCAGCATGGACAGAAGATCACCTTCCAGGGCGAGGCAGATGAAGCGgtacgtttcc ... cctcgtgcagCCGGATACCATTACAGGTGACATCGTCTTTGTATTGCAACTGAAGGAGCAT
EST: GAATGCAGCATGGACAGAAGATCACCTTCCAGGGCGAGGCAGATGAAGCG CCGGATACCATTACAGGTGACATCGTCTTTGTATTGCAACTGAAGGAGCATEST: gi|162152283|gb|FC328470.1|FC328470
genomic: GAATGCAGCATGGACAGAAGATCACCTTCCAGGGCGAGGCAGATGAAGCGgtacgtttcc ... cctcgtgcagCCGGATACCATTACAGGTGACATCGTCTTTGTATTGCAACTGAAGGAGCAT
EST: GAATGCAGCATGGACAGAAGATCACCTTCCAGGGCGAGGCAGATGAAGCG CCGGATACCATTACAGGTGACATCGTCTTTGTATTGCAACTGAAGGAGCATEST: gi|208387126|gb|DC941298.1|DC941298
genomic: GAATGCAGCATGGACAGAAGATCACCTTCCAGGGCGAGGCAGATGAAGCGgtacgtttcc ... cctcgtgcagCCGGATACCATTACAGGTGACATCGTCTTTGTATTGCAACTGAAGGAGCAT
EST: GAATGCAGCATGGACAGAAGATCACCTTCCAGGGCGAGGCAGATGAAGCG CCGGATACCATTACAGGTGACATTGTCTTTGTATTGCAACTGAAGGAGCATEST: gi|162180862|gb|FC358363.1|FC358363
genomic: GAATGCAGCATGGACAGAAGATCACCTTCCAGGGCGAGGCAGATGAAGCGgtacgtttcc ... cctcgtgcagCCGGATACCATTACAGGTGACATCGTCTTTGTATTGCAACTGAAGGAGCAT
EST: GAATGCAGCATGGACAGAAGATCACCTTCCAGGGCGAGGCAGATGAAGCG CCGGATACCATTACAGGTGACATCGTCTTTGTATTGCAACTGAAGGAGCATEST: gi|100400617|gb|BY954563.1|BY954563
genomic: GAATGCAGCATGGACAGAAGATCACCTTCCAGGGCGAGGCAGATGAAGCGgtacgtttcc ... cctcgtgcagCCGGATACCATTACAGGTGACATCGTCTTTGTATTGCAACTGAAGGAGCAT
EST: GAATGCAGCATGGACAGAAGATCACCTTCCAGGGCGAGGCAGATGAAGCG CCGGATACCATTACAGGTGACATCGTCTTTGTATTGCAACTGAAGGAGCATEST: gi|162167268|gb|FC342833.1|FC342833
genomic: GAATGCAGCATGGACAGAAGATCACCTTCCAGGGCGAGGCAGATGAAGCGgtacgtttcc ... cctcgtgcagCCGGATACCATTACAGGTGACATCGTCTTTGTATTGCAACTGAAGGAGCAT
EST: GAATGCAGCATGGACAGAAGATCACCTTCCAGGGCGAGGCAGATGAAGCG CCGGATACCATTACAGGTGACATCGTCTTTGTATTGCAACTGAAGGAGCATEST: gi|162258183|gb|FC433965.1|FC433965
genomic: GAATGCAGCATGGACAGAAGATCACCTTCCAGGGCGAGGCAGATGAAGCGgtacgtttcc ... cctcgtgcagCCGGATACCATTACAGGTGACATCGTCTTTGTATTGCAACTGAAGGAGCAT
EST: CAGGGCGAGGCAGATGAAGCG CCGGATACCATTACAGGTGACATCGTCTTTGTATTGCAACTGAAGGAGCAT
genomic: CAGGGCGAGGCAGATGAAGCGgtacgtttcc ... cctcgtgcagCCGGATACCATTACAGGTGACATCGTCTTTGTATTGCAACTGAAGGAGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAAAGGTTGTGCAGGACAAGAAATTGTTGGAAGTGCATGTAGAGAAAGGAATGCAGCATGGACAGAAGATCACCTTCCAGGGCGAGGCAGATGAAGCGgtacgtttcccagaacaaccacgtcaatgattatttatagttttgggatgccttagtagattgcaatgttgtggttcttcgtgattcggtattcctgaattaacacacctttgtgtgcgtcctcgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC