1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACGTAGTTCACCCCTTGAAGGTTTCGCTGGAAGACTTGTACAATGGAACTTCGAAGAAGTTGTCTCTGTCTCGGAATGTGCTTTGCTCAAAATGCAAAGGgtaagcctcttgtgcgtctattaaaatataaaaacctatcaaaataggttttttttaccacaggatcgttaaaatatcttagctcgaatgtgcctcggga...
species | Physcomitrella patens |
transcript | PP1S100_36V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCGAAGAAGTTGTCTCTGTCTCGGAATGTGCTTTGCTCAAAATGCAAAGG TAAGGGATCGAAGACTGGTGCATCCAGTCGATGCGCAGGATGTCAAGGTTCEST: gi|162221418|gb|FC397227.1|FC397227
genomic: TCGAAGAAGTTGTCTCTGTCTCGGAATGTGCTTTGCTCAAAATGCAAAGGgtaagcctct ... aattgtgcagTAAGGGATCGAAGACTGGTGCATCCAGTCGATGCGCAGGATGTCAAGGTTC
EST: TCGAAGAAGTTGTCTCTGTCTCGGAATGTGCTTTGCTCAAAATGCAAAGG TAAGGGATCGAAGACTGGTGCATCCAGTCGATGCGCAGGATGTCAAGGTTCEST: gi|162258184|gb|FC433966.1|FC433966
genomic: TCGAAGAAGTTGTCTCTGTCTCGGAATGTGCTTTGCTCAAAATGCAAAGGgtaagcctct ... aattgtgcagTAAGGGATCGAAGACTGGTGCATCCAGTCGATGCGCAGGATGTCAAGGTTC
EST: TCGAAGAAGTTGTCTCTGTCTCGGAATGTGCTTTGCTCAAAATGCAAAGG TAAGGGATCGAAGACTGGTGCATCCAGTCGATGCGCAGGATGTCAAGGTTCEST: gi|162152283|gb|FC328470.1|FC328470
genomic: TCGAAGAAGTTGTCTCTGTCTCGGAATGTGCTTTGCTCAAAATGCAAAGGgtaagcctct ... aattgtgcagTAAGGGATCGAAGACTGGTGCATCCAGTCGATGCGCAGGATGTCAAGGTTC
EST: TCGAAGAAGTTGTCTCTGTCTCGGAATGTGCTTTGCTCAAAATGCAAAGG TAAGGGATCGAAGACTGGTGCATCCAGTCGATGCGCAGGATGTCAAGGTTCEST: gi|162180862|gb|FC358363.1|FC358363
genomic: TCGAAGAAGTTGTCTCTGTCTCGGAATGTGCTTTGCTCAAAATGCAAAGGgtaagcctct ... aattgtgcagTAAGGGATCGAAGACTGGTGCATCCAGTCGATGCGCAGGATGTCAAGGTTC
EST: TCGAAGAAGTTGTCTCTGTCTCGGAATGTGCTTTGCTCAAAATGCAAAGG TAAGGGATCGAAGACTGGTGCATCCAGTCGATGCGCAGGATGTCAAGGTTCEST: gi|162158335|gb|FC334754.1|FC334754
genomic: TCGAAGAAGTTGTCTCTGTCTCGGAATGTGCTTTGCTCAAAATGCAAAGGgtaagcctct ... aattgtgcagTAAGGGATCGAAGACTGGTGCATCCAGTCGATGCGCAGGATGTCAAGGTTC
EST: TCGAAGAAGTTGTCTCTGTCTCGGAATGTGCTTTGCTCAAAATGCAAAGG TAAGGGATCGAAGACTGGTGCATCCAGTCGATGCGCAGGATGTCAAGGTTCEST: gi|100400617|gb|BY954563.1|BY954563
genomic: TCGAAGAAGTTGTCTCTGTCTCGGAATGTGCTTTGCTCAAAATGCAAAGGgtaagcctct ... aattgtgcagTAAGGGATCGAAGACTGGTGCATCCAGTCGATGCGCAGGATGTCAAGGTTC
EST: TCGAAGAAGTTGTCTCTGTCTCGGAATGTGCTTTGCTCAAAATGCAAAGG TAAGGGATCGAAGACTGGTGCATCCAGTCGATGCGCAGGATGTCAAGGTTCEST: gi|162160636|gb|FC336379.1|FC336379
genomic: TCGAAGAAGTTGTCTCTGTCTCGGAATGTGCTTTGCTCAAAATGCAAAGGgtaagcctct ... aattgtgcagTAAGGGATCGAAGACTGGTGCATCCAGTCGATGCGCAGGATGTCAAGGTTC
EST: TCGAAGAAGTTGTCTCTGTCTCGGAATGTGCTTTGCTCAAAATGCAAAGG TAAGGGATCGAAGACTGGTGCATCCAGTCGATGCGCAGGATGTCA
genomic: TCGAAGAAGTTGTCTCTGTCTCGGAATGTGCTTTGCTCAAAATGCAAAGGgtaagcctct ... aattgtgcagTAAGGGATCGAAGACTGGTGCATCCAGTCGATGCGCAGGATGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGTAGTTCACCCCTTGAAGGTTTCGCTGGAAGACTTGTACAATGGAACTTCGAAGAAGTTGTCTCTGTCTCGGAATGTGCTTTGCTCAAAATGCAAAGGgtaagcctcttgtgcgtctattaaaatataaaaacctatcaaaataggttttttttaccacaggatcgttaaaatatcttagctcgaatgtgcctcggga
- - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG