1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCTCGGGGTGTCGAAGAGCGCGTCGCAGGATGAGCTGAAGAAGGCGTACAGGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAGgtacgatagtgttttagttggggatcggtctctgtgtctagttccttggccgtggaaaggtctgcccgtcctcaggacatatccgatggacctacagagt...
species | Physcomitrella patens |
transcript | PP1S100_36V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAG TTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGGEST: gi|100378458|gb|BY968608.1|BY968608
genomic: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAGgtacgatagt ... tcttttgcagTTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGG
EST: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAG TTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGGEST: gi|162173330|gb|FC349501.1|FC349501
genomic: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAGgtacgatagt ... tcttttgcagTTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGG
EST: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAG TTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGGEST: gi|100406346|gb|BY955581.1|BY955581
genomic: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAGgtacgatagt ... tcttttgcagTTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGG
EST: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAG TTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGGEST: gi|162152660|gb|FC328327.1|FC328327
genomic: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAGgtacgatagt ... tcttttgcagTTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGG
EST: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAG TTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGGEST: gi|100422393|gb|BY976352.1|BY976352
genomic: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAGgtacgatagt ... tcttttgcagTTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGG
EST: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAG TTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGGEST: gi|100384792|gb|BY950782.1|BY950782
genomic: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAGgtacgatagt ... tcttttgcagTTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGG
EST: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAG TTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGGEST: gi|208388016|gb|DC933136.1|DC933136
genomic: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAGgtacgatagt ... tcttttgcagTTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGG
EST: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAG TTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGGEST: gi|162158335|gb|FC334754.1|FC334754
genomic: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAGgtacgatagt ... tcttttgcagTTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGG
EST: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAG TTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGGEST: gi|162184181|gb|FC360461.1|FC360461
genomic: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAGgtacgatagt ... tcttttgcagTTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGG
EST: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAG TTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGGEST: gi|162175064|gb|FC351145.1|FC351145
genomic: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAGgtacgatagt ... tcttttgcagTTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGG
EST: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAG TTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGGEST: gi|100410644|gb|BY992199.1|BY992199
genomic: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAGgtacgatagt ... tcttttgcagTTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGG
EST: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAG TTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGGEST: gi|100356515|gb|BY946404.1|BY946404
genomic: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAGgtacgatagt ... tcttttgcagTTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGG
EST: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAG TTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGGEST: gi|162160636|gb|FC336379.1|FC336379
genomic: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAGgtacgatagt ... tcttttgcagTTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGG
EST: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAG TTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGGEST: gi|162163670|gb|FC340282.1|FC340282
genomic: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAGgtacgatagt ... tcttttgcagTTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGG
EST: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAG TTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGGEST: gi|18360156|gb|BJ192218.1|BJ192218
genomic: GGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAGgtacgatagt ... tcttttgcagTTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCGG
EST: GAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGGAGAAG TTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCG
genomic: GAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGG-AGAAGgtacgatagt ... tcttttgcagTTCAAGGAGCTTTCTCAGGCATACGAAGTTTTAAGTGATCCCGAGAAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCGGGGTGTCGAAGAGCGCGTCGCAGGATGAGCTGAAGAAGGCGTACAGGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAGgtacgatagtgttttagttggggatcggtctctgtgtctagttccttggccgtggaaaggtctgcccgtcctcaggacatatccgatggacctacagagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA