1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaactaatgtgtcctttgatgtcaattgacaatagttgctgaagtgtatgttcaattcgcttggctgttcgtggttgttctcttcaatttacgtactgctaattttggaaatacttttgcagGGGAGACTATTGTTGAAAAGGACAGGTGTGGACAGTGCAAGGGTCAAAAGGTTGTGCAGGACAAGAAATTGTTGGAAGTGCATGTAGAGAAAGGAATGCA
species | Physcomitrella patens |
transcript | PP1S100_36V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAACATGATACAGCAGATGCAACATGTGTGTCCTGACTGCAAAGGATCTG GGGAGACTATTGTTGAAAAGGACAGGTGTGGACAGTGCAAGGGTEST: gi|162221418|gb|FC397227.1|FC397227
genomic: TAACATGATACAGCAGATGCAACATGTGTGTCCTGACTGCAAAGGATCTGgtaactaatg ... acttttgcagGGGAGACTATTGTTGAAAAGGACAGGTGTGGACAGTGCAAGGGT
EST: TAACATGATACAGCAGATGCAACATGTGTGTCCTGACTGCAAAGGATCTG GGGAGACTATTGTTGAAAAGGACAGGTGTGGACAGTGCAAGGGTCAAAAGGEST: gi|162167364|gb|FC343067.1|FC343067
genomic: TAACATGATACAGCAGATGCAACATGTGTGTCCTGACTGCAAAGGATCTGgtaactaatg ... acttttgcagGGGAGACTATTGTTGAAAAGGACAGGTGTGGACAGTGCAAGGGTCAAAAGG
EST: TAACATGATACAGCAGATGCAACATGTGTGTCCTGACTGCAAAGGATCTG GGGAGACTATTGTTGAAAAGGACAGGTGTGGACAGTGCAAGGGTCAAAAGGEST: gi|162258184|gb|FC433966.1|FC433966
genomic: TAACATGATACAGCAGATGCAACATGTGTGTCCTGACTGCAAAGGATCTGgtaactaatg ... acttttgcagGGGAGACTATTGTTGAAAAGGACAGGTGTGGACAGTGCAAGGGTCAAAAGG
EST: TAACATGATACAGCAGATGCAACATGTGTGTCCTGACTGCAAAGGATCTG GGGAGACTATTGTTGAAAAGGACAGGTGTGGACAGTGCAAGGGTCAAAAGGEST: gi|162152283|gb|FC328470.1|FC328470
genomic: TAACATGATACAGCAGATGCAACATGTGTGTCCTGACTGCAAAGGATCTGgtaactaatg ... acttttgcagGGGAGACTATTGTTGAAAAGGACAGGTGTGGACAGTGCAAGGGTCAAAAGG
EST: TAACATGATACAGCAGATGCAACATGTGTGTCCTGACTGCAAAGGATCTG GGGAGACTATTGTTGAAAAGGACAGGTGTGGACAGTGCAAGGGTCAAAAGGEST: gi|208387126|gb|DC941298.1|DC941298
genomic: TAACATGATACAGCAGATGCAACATGTGTGTCCTGACTGCAAAGGATCTGgtaactaatg ... acttttgcagGGGAGACTATTGTTGAAAAGGACAGGTGTGGACAGTGCAAGGGTCAAAAGG
EST: ATACAGCAGATGCAACATGTGTGTCCTGACTGCAAAGGATCTG GGGAGACTATTGTTGAAAAGGACAGGTGTGGACAGTGCAAGGGTCAAAAGGEST: gi|162180862|gb|FC358363.1|FC358363
genomic: ATACAGCAGATGCAACATGTGTGTCCTGACTGCAAAGGATCTGgtaactaatg ... acttttgcagGGGAGACTATTGTTGAAAAGGACAGGTGTGGACAGTGCAAGGGTCAAAAGG
EST: TAACATGATACAGCAGATGCAACATGTGTGTCCTGACTGCAAAGGATCTG GGGAGACTATTGTTGAAAAGGACAGGTGTGGACAGTGCAAGGGTCAAAAGGEST: gi|162158335|gb|FC334754.1|FC334754
genomic: TAACATGATACAGCAGATGCAACATGTGTGTCCTGACTGCAAAGGATCTGgtaactaatg ... acttttgcagGGGAGACTATTGTTGAAAAGGACAGGTGTGGACAGTGCAAGGGTCAAAAGG
EST: TAACATGATACAGCAGATGCAACATGTGTGTCCTGACTGCAAAGGATCTG GGGAGACTATTGTTGAAAAGGACAGGTGTGGACAGTGEST: gi|100400617|gb|BY954563.1|BY954563
genomic: TAACATGATACAGCAGATGCAACATGTGTGTCCTGACTGCAAAGGATCTGgtaactaatg ... acttttgcagGGGAGACTATTGTTGAAAAGGACAGGTGTGGACAGTG
EST: TAACATGATACAGCAGATGCAACATGTGTGTCCTGACTGCAAAGGATCTG GGGAGACTATTGTTGAAAAGGACAGGTGTGGACAGTGCAAGGGTCAAAAGGEST: gi|162167268|gb|FC342833.1|FC342833
genomic: TAACATGATACAGCAGATGCAACATGTGTGTCCTGACTGCAAAGGATCTGgtaactaatg ... acttttgcagGGGAGACTATTGTTGAAAAGGACAGGTGTGGACAGTGCAAGGGTCAAAAGG
EST: TAACATGATACAGCAGATGCAACATGTGTGTCCTGACTGCAAAGGATCTG GGGAGACTATTGTTGAAAAGGACAGGTGTGGACAGTGCAAGGGTCAAAAGG
genomic: TAACATGATACAGCAGATGCAACATGTGTGTCCTGACTGCAAAGGATCTGgtaactaatg ... acttttgcagGGGAGACTATTGTTGAAAAGGACAGGTGTGGACAGTGCAAGGGTCAAAAGG
ttcgtggttgttctcttcaatttacgtactgctaattttggaaatacttttgcagGGGAGACTATTGTTGAAAAGGACAGGTGTGGACAGTGCAAGGGTCAAAAGGTTGTGCAGGACAAGAAATTGTTGGAAGTGCATGTAGAGAAAGGAATGCA
tgctaat putative branch site (score: 31)
tactttt putative PPT
taattttggaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactaatgtgtcctttgatgtcaattgacaatagttgctgaagtgtatgttcaattcgcttggctgttcgtggttgttctcttcaatttacgtactgctaattttggaaatacttttgcagGGGAGACTATTGTTGAAAAGGACAGGTGTGGACAGTGCAAGGGTCAAAAGGTTGTGCAGGACAAGAAATTGTTGGAAGTGCATGTAGAGAAAGGAATGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA