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...gagtcctcaccaccagaaccatgagttttaccactaggccacgtgaatgtgcccatctctgttttatgcaagatataacatattagcattcattattcagGTTGAAGAAGACCTGAAAAATGGAATTGTTGGGTCTGTTCCAATTCCACCTGACGATGCTGACAAAGAAGAGGTTATCAATGCATTAGTTGCTAATGTTG
species | Oryza sativa |
transcript | LOC_Os11g29370.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CATATAGTTCTGATGAAACCAAAGAGGACATCAAACTATTGCGCATCCAA GTTGAAGAAGACCTGAAAAATGGAATTGTTGGGTCTGTTCCAATTCCACCTEST: gi|84117432|gb|CD151199.1|CD151199
genomic: CATATAGTTCTGATGAAACCAAAGAGGACATCAAACTATTGCGCATCCAAgtaagttatg ... cattattcagGTTGAAGAAGACCTGAAAAATGGAATTGTTGGGTCTGTTCCAATTCCACCT
EST: CATATAGTTCTGATGAAACCAAAGAGGACATCAAACTATTGCGCATCCAA GTTGAAGAAGACCTGAAAAATGGAATTGTTGGGTCTGTTCCAATTCCACCTEST: gi|33683942|gb|CF312181.1|CF312181
genomic: CATATAGTTCTGATGAAACCAAAGAGGACATCAAACTATTGCGCATCCAAgtaagttatg ... cattattcagGTTGAAGAAGACCTGAAAAATGGAATTGTTGGGTCTGTTCCAATTCCACCT
EST: CATATAGTTCTGATGAAACCAAAGAGGACATCAAACTATTGCGCATCCAA GTTGAAGAAGACCTGAAAAATGGAANTTGTTGGGTCTGTTCCAATTCCACCEST: gi|11173109|gb|AU164617.1|AU164617
genomic: CATATAGTTCTGATGAAACCAAAGAGGACATCAAACTATTGCGCATCCAAgtaagttatg ... cattattcagGTTGAAGAAGACCTGAAAAATGGAA-TTGTTGGGTCTGTTCCAATTCCACC
EST: GGACATCAAACTATTGCGCATCCAA GTTGAAGAAGACCTGAAAAATGGAATTGTTGGGTCTGTTCCAATTCCACCTEST: gi|29686092|gb|CB682367.1|CB682367
genomic: GGACATCAAACTATTGCGCATCCAAgtaagttatg ... cattattcagGTTGAAGAAGACCTGAAAAATGGAATTGTTGGGTCTGTTCCAATTCCACCT
EST: CATATAGTTCTGATGAAACCAAAGAGGACATCAAACTATTGCGCATCCAA GTTGAAGAAGACCTGAAAAATGGA-TTGTTGGGTCTGTTEST: gi|427846|gb|D23987.1|D23987
genomic: CATATAGTTCTGATGAAACCAAAGAGGACATCAAACTATTGCGCATCCAAgtaagttatg ... cattattcagGTTGAAGAAGACCTGAAAAATGGAATTGTTGGGTCTGTT
EST: GGACATCAAACTATTGCGCATCCAA GTTGAAGAAGACCTGAAAAATGGAATTGTTGGGTCTGTTCCAATTCCACCTEST: gi|58590134|gb|CF988442.1|CF988442
genomic: GGACATCAAACTATTGCGCATCCAAgtaagttatg ... cattattcagGTTGAAGAAGACCTGAAAAATGGAATTGTTGGGTCTGTTCCAATTCCACCT
EST: CATATAGTTCTGATGAAACCAAAGAGGACATCAAACTATTGCGCATCCAA GTTGAAGAAGACCTGAAAAATGGAATTGTTGGGTCTGTTCCAATTCCACCT
genomic: CATATAGTTCTGATGAAACCAAAGAGGACATCAAACTATTGCGCATCCAAgtaagttatg ... cattattcagGTTGAAGAAGACCTGAAAAATGGAATTGTTGGGTCTGTTCCAATTCCACCT
aatgtgcccatctctgttttatgcaagatataacatattagcattcattattcagGTTGAAGAAGACCTGAAAAATGGAATTGTTGGGTCTGTTCCAATTCCACCTGACGATGCTGACAAAGAAGAGGTTATCAATGCATTAGTTGCTAATGTTG
atataac putative branch site (score: 72)
aagatataacatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagtcctcaccaccagaaccatgagttttaccactaggccacgtgaatgtgcccatctctgttttatgcaagatataacatattagcattcattattcagGTTGAAGAAGACCTGAAAAATGGAATTGTTGGGTCTGTTCCAATTCCACCTGACGATGCTGACAAAGAAGAGGTTATCAATGCATTAGTTGCTAATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - -caccacc
- - - - - - - - - ccatgag
- - - - - - - - - - - - - - - - - - - - - gtgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcaag