1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGCTACTTTGAGATTTCGCAATCACTTGGGGTGGACAGTCCTGCTCAGATCTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgactagttctggtcaaatattcatgggaatgttcatgcttttatttggtggataagatgctttagctttaaccagtcgacctctctgggtgccattcctaatcatgtgatcatttcaagctatcattcgtttccttgggtcaagatttcatattatatttttctttcccgacattttctttttcag
species | Oryza sativa |
transcript | LOC_Os11g29370.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCTCCGCTCCCTGAGAEST: gi|86522174|gb|CI162380.1|CI162380
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|89183965|gb|CI046530.1|CI046530
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|58603896|gb|CK014424.1|CK014424
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATTTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|13807204|gb|AU181861.1|AU181861
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|86882162|gb|CI325681.1|CI325681
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|88247082|gb|CI246931.1|CI246931
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|33683943|gb|CF312182.1|CF312182
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|14192079|gb|AU184290.1|AU184290
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCNCCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCNCCGCTCCCTGAGAEST: gi|8528131|gb|AU092946.1|AU092946
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCNCCGCTCCCTGAGAEST: gi|88835286|gb|CI370589.1|CI370589
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|86840678|gb|CI333930.1|CI333930
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|88906886|gb|CI375958.1|CI375958
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|25806482|gb|CA762443.1|CA762443
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATTTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|86886282|gb|CI335985.1|CI335985
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|86483350|gb|CI125983.1|CI125983
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|13896281|gb|AU182617.1|AU182617
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCNCCGCTCCCTGAGAEST: gi|29686093|gb|CB682368.1|CB682368
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|89163810|gb|CI100700.1|CI100700
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|4716002|gb|AU057118.1|AU057118
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCNG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCNCCCTGAGAEST: gi|88968824|gb|CI098931.1|CI098931
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|88967144|gb|CI392106.1|CI392106
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|4716001|gb|AU057117.1|AU057117
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|9884555|gb|BE607388.1|BE607388
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|86522877|gb|CI163083.1|CI163083
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|29671700|gb|CB667975.1|CB667975
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|29615092|gb|CB620105.1|CB620105
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATTTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|87034440|gb|CI189064.1|CI189064
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CGTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|88962224|gb|CI097377.1|CI097377
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|88962181|gb|CI097334.1|CI097334
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|14192138|gb|AU184349.1|AU184349
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|89163403|gb|CI100293.1|CI100293
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|86432663|gb|CI086274.1|CI086274
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|86483980|gb|CI126613.1|CI126613
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|33655914|gb|CF278528.1|CF278528
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAEST: gi|3767686|gb|AU031713.1|AU031713
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
EST: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAG GTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
genomic: CTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgacta ... tctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTACTTTGAGATTTCGCAATCACTTGGGGTGGACAGTCCTGCTCAGATCTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGgtaatgactagttctggtcaaatattcatgggaatgttcatgcttttatttggtggataagatgctttagctttaaccagtcgacctctctgggtgccattcctaatcatgtgatcatttcaagctatcattcgtttccttgggtcaagatttcatattatatttttctttcccgacattttctttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC