1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...agaacgtgattttctaccagtcgaccataacttctgtgagcactaaggttgcgatttgaaccaaaagaaacgatataagaaattttaatcacattctcagGTGTGCAGAAGGAGAGGATGGTGGCAGAGGACATGTATGTGCTGTCAGCAGATGGGAAGGTGCTCTCCTCACCTGTATCAAAGCCATGGCCAAACAAGCC
species | Oryza sativa |
transcript | LOC_Os11g29370.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGACCCGGCGCTCCCCCTCGCCGATCAGCTCATCGTCATGTCCCCCTCCG GTGTGCAGAAGGAGAGGATGGTGGCAGAGGACATGTATGTGCTGTCAGCAGEST: gi|58696100|gb|CK084787.1|CK084787
genomic: CGACCCGGCGCTCCCCCTCGCCGATCAGCTCATCGTCATGTCCCCCTCCGgtatcctcct ... acattctcagGTGTGCAGAAGGAGAGGATGGTGGCAGAGGACATGTATGTGCTGTCAGCAG
EST: GGCGCTCCCCCTCGCCGATCAGCTCATCGTCATGTCCCCCTCCG GTGTGCAGAAGGAGAGGATGGTGGCAGAGGACATGTATGTGCTGTCAGCAGEST: gi|29634836|gb|CB639845.1|CB639845
genomic: GGCGCTCCCCCTCGCCGATCAGCTCATCGTCATGTCCCCCTCCGgtatcctcct ... acattctcagGTGTGCAGAAGGAGAGGATGGTGGCAGAGGACATGTATGTGCTGTCAGCAG
EST: GACCCGGCGCTCCCCCTCGCCGATCAGCTCATCAGTC-TGTCCCCCTCCG GTGTGCAGAAGGAGAGGATGGTGGCAGAGGACATGTATGTGCTGTCAGCAGEST: gi|29631427|gb|CB636436.1|CB636436
genomic: GACCCGGCGCTCCCCCTCGCCGATCAGCTCATC-GTCATGTCCCCCTCCGgtatcctcct ... acattctcagGTGTGCAGAAGGAGAGGATGGTGGCAGAGGACATGTATGTGCTGTCAGCAG
EST: CGACCCGGCGCTCCCCCTCGCCGATCAGCTCATCGTCATGTCCCCCTCCG GTGTGCAGAAGGAGAGGATGGTGGCAGAGGACATGTATGTGCTGTCAGCAGEST: gi|14191667|gb|AU183878.1|AU183878
genomic: CGACCCGGCGCTCCCCCTCGCCGATCAGCTCATCGTCATGTCCCCCTCCGgtatcctcct ... acattctcagGTGTGCAGAAGGAGAGGATGGTGGCAGAGGACATGTATGTGCTGTCAGCAG
EST: CGACCCGGCGCTCCCCCTCGCCGATCAGCTCATCGTCATGTCCCCCTCCG GTGTGCAGAAGGAGAGGATGGTGGCAGAGGACATGTATGTGCTGTCAGCAGEST: gi|29674778|gb|CB671053.1|CB671053
genomic: CGACCCGGCGCTCCCCCTCGCCGATCAGCTCATCGTCATGTCCCCCTCCGgtatcctcct ... acattctcagGTGTGCAGAAGGAGAGGATGGTGGCAGAGGACATGTATGTGCTGTCAGCAG
EST: CGACCCGGCGCTCCCCCTCGCCGATCAGCTCATCGTCATGTCCCCCTCCG GTGTGCAGAAGGAGAGGATGGTGGCAGAGGACATGTATGTGCTGTCAGCAG
genomic: CGACCCGGCGCTCCCCCTCGCCGATCAGCTCATCGTCATGTCCCCCTCCGgtatcctcct ... acattctcagGTGTGCAGAAGGAGAGGATGGTGGCAGAGGACATGTATGTGCTGTCAGCAG
aggttgcgatttgaaccaaaagaaacgatataagaaattttaatcacattctcagGTGTGCAGAAGGAGAGGATGGTGGCAGAGGACATGTATGTGCTGTCAGCAGATGGGAAGGTGCTCTCCTCACCTGTATCAAAGCCATGGCCAAACAAGCC
ttttaat putative branch site (score: 174)
cattctc putative PPT
aaaagaaacgatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaacgtgattttctaccagtcgaccataacttctgtgagcactaaggttgcgatttgaaccaaaagaaacgatataagaaattttaatcacattctcagGTGTGCAGAAGGAGAGGATGGTGGCAGAGGACATGTATGTGCTGTCAGCAGATGGGAAGGTGCTCTCCTCACCTGTATCAAAGCCATGGCCAAACAAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - -acttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataagaaa