1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGTGCTGTCAGCAGATGGGAAGGTGCTCTCCTCACCTGTATCAAAGCCATGGCCAAACAAGCCTCCAAAATGTACTGACTGTGCTCCTCTGTTCATGAAGgttatcagtgctatcctttgcttaatttgtccgcttcaacttgttttagtctaaattgtctaattttcattggtattttgcag
species | Oryza sativa |
transcript | LOC_Os11g29370.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGCCAAACAAGCCTCCAAAATGTACTGACTGTGCTCCTCTGTTCATGAAG GCTTATCTGATGAGAGGAGCTGGGGCTGTTATTCATAGCCATGGGATGGAAEST: gi|218485973|gb|FG956977.1|FG956977
genomic: GGCCAAACAAGCCTCCAAAATGTACTGACTGTGCTCCTCTGTTCATGAAGgttatcagtg ... tattttgcagGCTTATCTGATGAGAGGAGCTGGGGCTGTTATTCATAGCCATGGGATGGAA
EST: CTGACTGTGCTCCTCTGTTCATGAAG GCTTATCTGATGAGAGGAGCTGGGGCTGTTATTCATAGCCATGGGATGGAAEST: gi|29634818|gb|CB639827.1|CB639827
genomic: CTGACTGTGCTCCTCTGTTCATGAAGgttatcagtg ... tattttgcagGCTTATCTGATGAGAGGAGCTGGGGCTGTTATTCATAGCCATGGGATGGAA
EST: GGCCAAACAAGCCTCCAAAATGTACTGACTGTGCTCCTCTGTTCATGAAG GCTTATCTGATGAGAGGAGCTGGGGCTGTTATTCATAGCCATGGGATGGAAEST: gi|58696100|gb|CK084787.1|CK084787
genomic: GGCCAAACAAGCCTCCAAAATGTACTGACTGTGCTCCTCTGTTCATGAAGgttatcagtg ... tattttgcagGCTTATCTGATGAGAGGAGCTGGGGCTGTTATTCATAGCCATGGGATGGAA
EST: GGCCAAACAAGCCTCCAAAATGTACTGACTGTGCTCCTCTGTTCATGAAG GCTTATCTGATGAGAGGAGCTGGGGCTGTTATTCATAGCCATGGGATGGAAEST: gi|29634836|gb|CB639845.1|CB639845
genomic: GGCCAAACAAGCCTCCAAAATGTACTGACTGTGCTCCTCTGTTCATGAAGgttatcagtg ... tattttgcagGCTTATCTGATGAGAGGAGCTGGGGCTGTTATTCATAGCCATGGGATGGAA
EST: GGCCAAACAAGCCTCCAAAATGTACTGACTGTGCTCCTCTGTTCATGAAG GCTTATCTGATGAGAGGAGCTGGGGCTGTTATTCATAGCCATGGGATGGAAEST: gi|29631427|gb|CB636436.1|CB636436
genomic: GGCCAAACAAGCCTCCAAAATGTACTGACTGTGCTCCTCTGTTCATGAAGgttatcagtg ... tattttgcagGCTTATCTGATGAGAGGAGCTGGGGCTGTTATTCATAGCCATGGGATGGAA
EST: GGCCAAACAAGCCTCCAAAATGTACTGACTGTGCTCCTCTGTTCATGAAG GCTTATCTGATGAGAGGAGCTGGGGCTGTTATTCATAGCCATGGGATGGAAEST: gi|14191667|gb|AU183878.1|AU183878
genomic: GGCCAAACAAGCCTCCAAAATGTACTGACTGTGCTCCTCTGTTCATGAAGgttatcagtg ... tattttgcagGCTTATCTGATGAGAGGAGCTGGGGCTGTTATTCATAGCCATGGGATGGAA
EST: GGCCAAACAAGCCTCCAAAATGTACTGACTGTGCTCCTCTGTTCATGAAG GCTTATCTGATGAGAGGAGCTGGGGCTGTTATTCATAGCCATGGGATGGAAEST: gi|29674778|gb|CB671053.1|CB671053
genomic: GGCCAAACAAGCCTCCAAAATGTACTGACTGTGCTCCTCTGTTCATGAAGgttatcagtg ... tattttgcagGCTTATCTGATGAGAGGAGCTGGGGCTGTTATTCATAGCCATGGGATGGAA
EST: GGCCAAACAAGCCTCCAAAATGTACTGACTGTGCTCCTCTGTTCATGAAG GCTTATCTGATGAGAGGAGCTGGGGCTGTTATTCATAGCCATGGGATGGAAEST: gi|29686092|gb|CB682367.1|CB682367
genomic: GGCCAAACAAGCCTCCAAAATGTACTGACTGTGCTCCTCTGTTCATGAAGgttatcagtg ... tattttgcagGCTTATCTGATGAGAGGAGCTGGGGCTGTTATTCATAGCCATGGGATGGAA
EST: GGCCAAACAAGCCTCCAAAATGTACTGACTGTGCTCCTCTGTTCATGAAG GCTTATCTGATGAGAGGAGCTGGGGCTGTTATTCATAGCCATGGGATGGAA
genomic: GGCCAAACAAGCCTCCAAAATGTACTGACTGTGCTCCTCTGTTCATGAAGgttatcagtg ... tattttgcagGCTTATCTGATGAGAGGAGCTGGGGCTGTTATTCATAGCCATGGGATGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGCTGTCAGCAGATGGGAAGGTGCTCTCCTCACCTGTATCAAAGCCATGGCCAAACAAGCCTCCAAAATGTACTGACTGTGCTCCTCTGTTCATGAAGgttatcagtgctatcctttgcttaatttgtccgcttcaacttgttttagtctaaattgtctaattttcattggtattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC