1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAATCAGAAATCCTGGAACAGATAGATCGAGATGTGAAAAGAACACATCCTGAAATGCCGTTTTTCTCTGCCAAGGCTAACCAGgtttcacttcagtgccttggaattccttatttccatttaaactacaagtaattgtcatttggactaaatttttcaaacacatttcag
species | Oryza sativa |
transcript | LOC_Os11g28990.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGAAAAGAACACATCCTGAAATGCCGTTTTTCTCTGCCAAGGCTAACCAG GAATCTCTAAGGCGTGTTCTCATTATCTTCTCAAAATTAAATCCTACCATAEST: gi|88342456|gb|CI645978.1|CI645978
genomic: TGAAAAGAACACATCCTGAAATGCCGTTTTTCTCTGCCAAGGCTAACCAGgtttcacttc ... cacatttcagGAATCTCTAAGGCGTGTTCTCATTATCTTCTCAAAATTAAATCCTACCATA
EST: TGAAAAGAACACATCCTGAAATGCCGTTTTTCTCTGCCAAGGCTAACCAG GAATCTCTAAGGCGTGTTCTCATTATCTTCTCAAAATTAAATCCTACCATAEST: gi|218498347|gb|FG968585.1|FG968585
genomic: TGAAAAGAACACATCCTGAAATGCCGTTTTTCTCTGCCAAGGCTAACCAGgtttcacttc ... cacatttcagGAATCTCTAAGGCGTGTTCTCATTATCTTCTCAAAATTAAATCCTACCATA
EST: TGAAGAGAACACATCCTGAAATGCCGTTTTTCTCTGCCAAGGCTAACCAG GAATCTCTAAGGCGTATTCTCATTGTCTTCTCAAAATTAAATCCTACCATAEST: gi|163925673|gb|EG710838.1|EG710838
genomic: TGAAAAGAACACATCCTGAAATGCCGTTTTTCTCTGCCAAGGCTAACCAGgtttcacttc ... cacatttcagGAATCTCTAAGGCGTGTTCTCATTATCTTCTCAAAATTAAATCCTACCATA
EST: TGAAAAGAACACATCCTGAAATGCCGTTTTTCTCTGCCAAGGCTAACCAG GAATCTCTAAGGCGTGTTCTCATTATCTTCTCAAAATTAAATCCTACCATA
genomic: TGAAAAGAACACATCCTGAAATGCCGTTTTTCTCTGCCAAGGCTAACCAGgtttcacttc ... cacatttcagGAATCTCTAAGGCGTGTTCTCATTATCTTCTCAAAATTAAATCCTACCATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATCAGAAATCCTGGAACAGATAGATCGAGATGTGAAAAGAACACATCCTGAAATGCCGTTTTTCTCTGCCAAGGCTAACCAGgtttcacttcagtgccttggaattccttatttccatttaaactacaagtaattgtcatttggactaaatttttcaaacacatttcag
- - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - AAGAAC