1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ggctaggccaaaaccctggtccatacctggagattttggccttgcgaaacaaggcgtcaattggttgtgtatgaatacactgatattttcttttgaccagTCAGAAAAAATACGGAGATTTGAGGAGTCAAAGTTGCTAAGAAAGAAAGAATTAAATAGTGACAAAATTGGCCTTCTACCAAGAGCCAAAGTTACTAATG
species | Oryza sativa |
transcript | LOC_Os11g28990.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAAGCGGAGCCAGTATAGTGCATATAAAGATGAATTTCTCCTAAATCCT TCAGAAAAAATACGGAGATTTGAGGAGTCAAAGTTGCTAAGAAAGAAAGAA
genomic: AGAAGCGGAGCCAGTATAGTGCATATAAAGATGAATTTCTCCTAAATCCTgtaagttatg ... ttttgaccagTCAGAAAAAATACGGAGATTTGAGGAGTCAAAGTTGCTAAGAAAGAAAGAA
gaaacaaggcgtcaattggttgtgtatgaatacactgatattttcttttgaccagTCAGAAAAAATACGGAGATTTGAGGAGTCAAAGTTGCTAAGAAAGAAAGAATTAAATAGTGACAAAATTGGCCTTCTACCAAGAGCCAAAGTTACTAATG
cactgat putative branch site (score: 10)
tattttctttt CT-rich tract
tgatattttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggctaggccaaaaccctggtccatacctggagattttggccttgcgaaacaaggcgtcaattggttgtgtatgaatacactgatattttcttttgaccagTCAGAAAAAATACGGAGATTTGAGGAGTCAAAGTTGCTAAGAAAGAAAGAATTAAATAGTGACAAAATTGGCCTTCTACCAAGAGCCAAAGTTACTAATG
- - - gccaaaa
- - - - - - - - - - ccatacc
- - - - - - - - - - - - - - - - - - - gccttgc
- - - - - - - - - - - - - - - - - - - - - - -gaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtatg