1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAGGAATAGGCGGTGTAACGACCCAGATTTTTTCCTTGATTTTGAAGAGATATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGgtaagacgctttaaatttaaattcttgaagcattcagaacataagtacataaccattatatatttaggttgcaggagctctttcatcactaatgttagta...
species | Oryza sativa |
transcript | LOC_Os11g01890.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTG GTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCEST: gi|88834115|gb|CI077596.1|CI077596
genomic: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGgtaagacgct ... cttattacagGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTC
EST: ATCACGAGAGCAAAAGTTGTG GTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCEST: gi|33653426|gb|CF276040.1|CF276040
genomic: ATCACGAGAGCAAAAGTTGTGgtaagacgct ... cttattacagGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTC
EST: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTG GTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCEST: gi|87025956|gb|CI257114.1|CI257114
genomic: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGgtaagacgct ... cttattacagGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTC
EST: TATATGTTATTGACTCAAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTG GTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCEST: gi|88218129|gb|CI217978.1|CI217978
genomic: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGgtaagacgct ... cttattacagGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTC
EST: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTG GTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCEST: gi|89170131|gb|CI039408.1|CI039408
genomic: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGgtaagacgct ... cttattacagGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTC
EST: TATATGTTATTGACTCAAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTG GTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCEST: gi|29662875|gb|CB659150.1|CB659150
genomic: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGgtaagacgct ... cttattacagGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTC
EST: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTG GTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCEST: gi|87025963|gb|CI257121.1|CI257121
genomic: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGgtaagacgct ... cttattacagGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTC
EST: TATATGTTATTGACTCAAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTG GTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCEST: gi|58603685|gb|CK014213.1|CK014213
genomic: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGgtaagacgct ... cttattacagGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTC
EST: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTG GTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCEST: gi|88228264|gb|CI227744.1|CI227744
genomic: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGgtaagacgct ... cttattacagGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTC
EST: CAATCACGAGAGCAAAAGTTGTG GTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCEST: gi|86436668|gb|CI118390.1|CI118390
genomic: CAATCACGAGAGCAAAAGTTGTGgtaagacgct ... cttattacagGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTC
EST: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCCAAAGTTGTG GTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCEST: gi|86539535|gb|CI179741.1|CI179741
genomic: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGgtaagacgct ... cttattacagGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTC
EST: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTG GTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCEST: gi|86432201|gb|CI085812.1|CI085812
genomic: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGgtaagacgct ... cttattacagGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTC
EST: GAGAGCAAAAGTTGTG GTAAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCEST: gi|86855486|gb|CI267015.1|CI267015
genomic: GAGAGCAAAAGTTGTGgtaagacgct ... cttattacagGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTC
EST: TATATGTTATTGACTCAAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTG GTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCEST: gi|88852689|gb|CI008882.1|CI008882
genomic: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGgtaagacgct ... cttattacagGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTC
EST: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTG GTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTC
genomic: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGgtaagacgct ... cttattacagGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGGAATAGGCGGTGTAACGACCCAGATTTTTTCCTTGATTTTGAAGAGATATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGgtaagacgctttaaatttaaattcttgaagcattcagaacataagtacataaccattatatatttaggttgcaggagctctttcatcactaatgttagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA