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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCAACGAGGACGAATTCCACAAGATTCGCCTACTGCACTGCGACTTTTTTATCCGCAAGGTGCCTGACCCCGACGACGACGTCTTCGACTTCCGGGAGgtatacatcctcatttatctgtctaacactagtacattctttgctaattgcctgtgttatcaagcatgtatttgacaatgctatctgttaatgcaacatctcatgacacattcattgcagtgctatccaaattgacagaactcaatcttttaggttgattgaactaaatcatgtgttccttcataatgtgcaacag

Basic information

species Oryza sativa
transcript LOC_Os11g01890.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g01890.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM5G829928_T02 (Zea mays), 5'ss of exon 1
CGTCAACGAGGACGAATTCCACAAGATTCGCCTACTGCACTGCGACTTTTTTATCCGCAAGGTGCCTGACCCCGACGACGACGTCTTCGACTTCCGGGAGgtatacatcctcatttatctgtctaa-cactagtacattctttgctaattgcctgtgttatcaagcatgtatt-tgacaatgctatctgttaatgcaacatctcatgacacattcattgcagtgctatccaaattgacagaactcaatcttttaggttgattgaactaaatcatgtgttccttcataatgtgcaacag
|||  | |||||||| || ||||||||| | || || |||||||||||  |||||||||||||||| ||||||||||||||||||||||||||| | ||||||||  |   |||    |   ||   || ||||   | ||      |  || || | |  | || |    || ||||||     |  | || | |||  |||||  |                                                                                          
CGTGGATGAGGACGAGTTTCACAAGATTAGGCTGCTCCACTGCGACTTCCTTATCCGCAAGGTGCCCGACCCCGACGACGACGTCTTCGACTTCAGAGAGgtatatgtagccataagacaaccttctcattagtcagtact------accgc-tgagcttcctagtacaatttgtgacaactgcctgcggtatttcaa--tctcaccaa-----------------------------------------------------------------------------------------

upper sequence: LOC_Os11g01890.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA06G12370.1 (Glycine max), 5'ss of exon 1
CGTCAACGAGGACGAATTCCACAAGATTCGCCTACTGCACTGCGACTTTTTTATCCGCAAGGTGCCTGACCCCGACGACGACGTCTTCGACTTCCGGGAGgtatacatcctcatttatctgtctaacactagtacattctttgctaattgcctgtgttatcaagcatgtatttgacaatgctatctgttaatgcaacatctcatgacacattcattgcagtgctatccaaattgacagaactcaatcttttaggttgattgaactaaatcatgtgttccttcataatgtgcaacag
  ||||||||||||| |||||||||||| ||||  |  | |||||||| || || ||||||   |||||||||||| |||| |||| ||||||| | |||||      | ||  || |   |||    ||      || |||| |  |||      || |||  | |  | |||| |    | |  ||                                                                                                            
AATCAACGAGGACGAGTTCCACAAGATTTGCCTGGTCGATTGCGACTTCTTCATTCGCAAGCCCCCTGACCCCGACAACGATGTCTACGACTTCAGAGAGgttctacacttcgattctacctcttcttct----tcttttttgttg-ttgttcaacttttcac-cgttgagttga-atctttgttcgtag----------------------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29662875|gb|CB659150.1|CB659150
EST:     GCAAGGTGCCTGACCCCGACGACGACGTCTTCGACTTCCGGGAG                         ATGTATGTCACGCCGCCTGACACTGACATCTACTCCATCCCAAGGGTTCTT
genomic: GCAAGGTGCCTGACCCCGACGACGACGTCTTCGACTTCCGGGAGgtatacatcc ... tgtgcaacagATGTATGTCACGCCGCCTGACACTGACATCTACTCCATCCCAAGGGTTCTT