1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAGGTGCATGAAGAAAAATTTTGGTCGTTACCACGTTAGTGAGCCGCCTGTTGAGCATTTGCGTGATCCCCTATACAAGACAGAAAGGGAGATCATGAAGgtatgtgtgagagtgttgtttcctctgctaatttgttctaccactctgttatgcaattatatttgtcataaagaaagattgagtgggtaatgctgcttga...
species | Oryza sativa |
transcript | LOC_Os11g01890.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGAGCATTTGCGTGATCCCCTATACAAGACAGAAAGGGAGATCATGAAG GTTTTCTTAACAAAACATTACAGGAATAGGCGGTGTAACGACCCAGATTTTEST: gi|87025956|gb|CI257114.1|CI257114
genomic: TTGAGCATTTGCGTGATCCCCTATACAAGACAGAAAGGGAGATCATGAAGgtatgtgtga ... tatgctgtagGTTTTCTTAACAAAACATTACAGGAATAGGCGGTGTAACGACCCAGATTTT
EST: GATCCCCTATACAAGACAGAAAGGGAGATCATGAAG GTTTTCTTAACAAAACATTACAGGAATAGGCGGTGTAACGACCCAGATTTTEST: gi|29662875|gb|CB659150.1|CB659150
genomic: GATCCCCTATACAAGACAGAAAGGGAGATCATGAAGgtatgtgtga ... tatgctgtagGTTTTCTTAACAAAACATTACAGGAATAGGCGGTGTAACGACCCAGATTTT
EST: TTGAGCATTTGCGTGATCCCCTATACAAGACAGAAAGGGAGATCATGAAG GTTTTCTTAACAAAACATTACAGGAATAGGCGGTGTAACGACCCAGATTTTEST: gi|58603685|gb|CK014213.1|CK014213
genomic: TTGAGCATTTGCGTGATCCCCTATACAAGACAGAAAGGGAGATCATGAAGgtatgtgtga ... tatgctgtagGTTTTCTTAACAAAACATTACAGGAATAGGCGGTGTAACGACCCAGATTTT
EST: TTGAGCATTTGCGTGATCCCCTATACAAGACAGAAAGGGAGATCATGAAG GTTTTCTTAACGAAACATTACAGGAATAGGCGGTGTAACGACCCAGATTTT
genomic: TTGAGCATTTGCGTGATCCCCTATACAAGACAGAAAGGGAGATCATGAAGgtatgtgtga ... tatgctgtagGTTTTCTTAACAAAACATTACAGGAATAGGCGGTGTAACGACCCAGATTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGTGCATGAAGAAAAATTTTGGTCGTTACCACGTTAGTGAGCCGCCTGTTGAGCATTTGCGTGATCCCCTATACAAGACAGAAAGGGAGATCATGAAGgtatgtgtgagagtgttgtttcctctgctaatttgttctaccactctgttatgcaattatatttgtcataaagaaagattgagtgggtaatgctgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagtggg