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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTATGTCACGCCGCCTGACACTGACATCTACTCCATCCCAAGGGTTCTTGCTCCGATGCCGCAAAAGgtgcccatgtctcttttttttgatctgtttcaggcaaatgtaaatgggcattgaggtgtaatcattgttttcctggttgaaagcag

Basic information

species Oryza sativa
transcript LOC_Os11g01890.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g01890.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G829928_T02 (Zea mays), 5'ss of exon 2
ATGTATGTCACGCCGCCTGACACTGACATCTACTCCATCCCAAGGGTTCTTGCTCCGATGCCGCAAAAGgtg----cccatgtctcttttttttgatctgt---ttcaggcaaatgtaaatgggcattgaggtgtaatcattgttttcctggttgaaagcag
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ATGTATGTCACGCCACCGGACACCGACATCTACTCCATTCCGAGGGTTCTTGCCCCGATGCCGCAGAAGgtgggaacacacttttcagctatttcgcatgtcagttcagatgaatgtgaaatgtcat-gatgtgtgattcttgtttctcttgttgggattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29662875|gb|CB659150.1|CB659150
EST:     ACACTGACATCTACTCCATCCCAAGGGTTCTTGCTCCGATGCCGCAAAAG                         TATGTGAGGTGCATGAAGAAAAATTTTGGTCGTTACCACGTTAGTGAGCCG
genomic: ACACTGACATCTACTCCATCCCAAGGGTTCTTGCTCCGATGCCGCAAAAGgtgcccatgt ... ttgaaagcagTATGTGAGGTGCATGAAGAAAAATTTTGGTCGTTACCACGTTAGTGAGCCG