1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCTTAGAGGATGGTGCTTCTTCGACGGTGGATGGTGGTGAATGTCAGACGAATAGTGGGAGCAGTCCTTGTTCTTCTTTGGGACTGAAATTTAATGAATCgtatgtattttcaaacgagtattggttttatcctgtctgaagcagctaacagttaatgtcttgtcacatttcttatttttcttttag
species | Oryza sativa |
transcript | LOC_Os10g37730.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AATAGTGGGAGCAGTCCTTGTTCTTCTTTGGGACTGAAATTTAATGAATC TGCTCGTTTGAGATATATCAACAAACCTGCTGATGGCGGTGTTACAGCACTEST: gi|29682101|gb|CB678376.1|CB678376
genomic: AATAGTGGGAGCAGTCCTTGTTCTTCTTTGGGACTGAAATTTAATGAATCgtatgtattt ... tttcttttagTGCTCGTTTGAGATATATCAACAAACCTGCTGATGGCGGTGTTACAGCACT
EST: AATAGTGGGAGCAGTCCTTGTTCTTCTTTGGGACTGAAATTTAATGAATC TGCTCGTTTGAGATATATCAACAAACCTGCTGATGGCGGTGTTACAGCACTEST: gi|29645490|gb|CB650497.1|CB650497
genomic: AATAGTGGGAGCAGTCCTTGTTCTTCTTTGGGACTGAAATTTAATGAATCgtatgtattt ... tttcttttagTGCTCGTTTGAGATATATCAACAAACCTGCTGATGGCGGTGTTACAGCACT
EST: AATAGTGGGAGCAGTCCTTGTTCTTCTTTGGGACTGAAATTTAATGAATC TGCTCGTTTGAGATATATCAACAAACCTGCTGATGGCGGTGTTACAGCACTEST: gi|29673129|gb|CB669404.1|CB669404
genomic: AATAGTGGGAGCAGTCCTTGTTCTTCTTTGGGACTGAAATTTAATGAATCgtatgtattt ... tttcttttagTGCTCGTTTGAGATATATCAACAAACCTGCTGATGGCGGTGTTACAGCACT
EST: AATAGTGGGAGCAGTCCTTGTTCTTCTTTGGGACTGAAATTTAATGAATC TGCTCGTTTGAGATATATCAACAAACCTGCTGATGGCGGTGTTACAGCACTEST: gi|29632141|gb|CB637150.1|CB637150
genomic: AATAGTGGGAGCAGTCCTTGTTCTTCTTTGGGACTGAAATTTAATGAATCgtatgtattt ... tttcttttagTGCTCGTTTGAGATATATCAACAAACCTGCTGATGGCGGTGTTACAGCACT
EST: AATAGTGGGAGCAGTCCTTGTTCTTCTTTGGGACTGAAATTTAATGAATC TGCTCGTTTGAGATATATCAACAAACCTGCTGATGGCGGTGTTACAGCACTEST: gi|29641797|gb|CB646804.1|CB646804
genomic: AATAGTGGGAGCAGTCCTTGTTCTTCTTTGGGACTGAAATTTAATGAATCgtatgtattt ... tttcttttagTGCTCGTTTGAGATATATCAACAAACCTGCTGATGGCGGTGTTACAGCACT
EST: AATAGTGGGAGCAGTCCTTGTTCTTCTTTGGGACTGAAATTTAATGAATC TGCTCGTTTGAGATATATCAACAAACCTGCTGATGGCGGTGTTACAGCACTEST: gi|86877155|gb|CI311450.1|CI311450
genomic: AATAGTGGGAGCAGTCCTTGTTCTTCTTTGGGACTGAAATTTAATGAATCgtatgtattt ... tttcttttagTGCTCGTTTGAGATATATCAACAAACCTGCTGATGGCGGTGTTACAGCACT
EST: AATAGTGGGAGCAGTCCTTGTTCTTCTTTGGGACTGAAATTTAATGAATC TGCTCGTTTGAGATATATCAACAAACCTGCTGATGGCGGTGTTACAGCACTEST: gi|29628246|gb|CB633257.1|CB633257
genomic: AATAGTGGGAGCAGTCCTTGTTCTTCTTTGGGACTGAAATTTAATGAATCgtatgtattt ... tttcttttagTGCTCGTTTGAGATATATCAACAAACCTGCTGATGGCGGTGTTACAGCACT
EST: AATAGTGGGAGCAGTCCTTGTTCTTCTTTGGGACTGAGATTTAATGAATC TGCTCGTTTGAGATATATCAACAAACCTGCTGATGGCGGTGTTACAGCACTEST: gi|29673087|gb|CB669362.1|CB669362
genomic: AATAGTGGGAGCAGTCCTTGTTCTTCTTTGGGACTGAAATTTAATGAATCgtatgtattt ... tttcttttagTGCTCGTTTGAGATATATCAACAAACCTGCTGATGGCGGTGTTACAGCACT
EST: AATAGTGGGAGCAGTCCTTGTTCTTCTTTGGGACTGAAATTTAATGAATC TGCTCGTTTGAGATATATCAACAAACCTGCTGATGGCGGTGTTACAGCACTEST: gi|29644924|gb|CB649931.1|CB649931
genomic: AATAGTGGGAGCAGTCCTTGTTCTTCTTTGGGACTGAAATTTAATGAATCgtatgtattt ... tttcttttagTGCTCGTTTGAGATATATCAACAAACCTGCTGATGGCGGTGTTACAGCACT
EST: AATAGTGGGAGCAGTCCTTGTTCTTCTTTGGGACTGAAATTTAATGAATC TGCTCGTTTGAGATATATCAACAAACCTGCTGATGGCGGTGTTACAGCACTEST: gi|29615014|gb|CB620027.1|CB620027
genomic: AATAGTGGGAGCAGTCCTTGTTCTTCTTTGGGACTGAAATTTAATGAATCgtatgtattt ... tttcttttagTGCTCGTTTGAGATATATCAACAAACCTGCTGATGGCGGTGTTACAGCACT
EST: AATAGTGGGAGCAGTCCTTGTTCTTCTTTGGGACTGAAATTTAATGAATC TGCTCGTTTGAGATATATCAACAAACCTGCTGATGGCGGTGTTACAGCACT
genomic: AATAGTGGGAGCAGTCCTTGTTCTTCTTTGGGACTGAAATTTAATGAATCgtatgtattt ... tttcttttagTGCTCGTTTGAGATATATCAACAAACCTGCTGATGGCGGTGTTACAGCACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTTAGAGGATGGTGCTTCTTCGACGGTGGATGGTGGTGAATGTCAGACGAATAGTGGGAGCAGTCCTTGTTCTTCTTTGGGACTGAAATTTAATGAATCgtatgtattttcaaacgagtattggttttatcctgtctgaagcagctaacagttaatgtcttgtcacatttcttatttttcttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG