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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGATGCTGCTGGAGCTCAGCCCGGCGCTGGCGCGGTACTCCACCTTCGGCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGACgtccgtgacaacccccttcacgccgtcctttgatttctttcgctggtggtttttttgttcgatttgatcgcgaattgatgtgtgtgtgtgtgtgtgtttttttttttttttggtttggttttgcatgcag

Basic information

species Oryza sativa
transcript LOC_Os10g37730.3
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g37730.3 (Oryza sativa), 5'ss of exon 1
lower sequence: AC194389.3_FGT001 (Zea mays), 5'ss of exon 1
GCGGATGCTGCTGGAGCTCAGCCCGGCGCTGGCGCGGTACTCCACCTTCGGCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGACgtccgtgacaacccccttcacgccgtcctttgatttctttcgctggtggtttttttgttcgattt--gatcgcgaattgatgtgtgtgtgtgtgtgtgtttttttttttttttggtttggttttgcatgcag
|||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||| | ||||| |||||||||||||| |||||||| |||||||| || | | |  || | |  |   |  |  |  |||   |||              ||||||||  | ||   | ||| ||| |  ||||                                         
GCGGATGCTGCTGGAGCTCAGCCCCGCGCTCGCGCGCTACTCCACCTTCGGCGGCCTCAACACTCCGCTACACTTCGCCGCCGCCAAGGGCCATCTCGACgtacgcg-cgaatccttccgtgt--ttttcagggttcccccgc--------------ttcgatttcgggtcagcagttgttgtctccgtgtag---------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88424672|gb|CI606471.1|CI606471
EST:     GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGAC                         ATTGTGACGCTGTTGGTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
genomic: GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGACgtccgtgaca ... ttgcatgcagATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
EST: gi|29682101|gb|CB678376.1|CB678376
EST:     GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGAC                         ATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
genomic: GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGACgtccgtgaca ... ttgcatgcagATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
EST: gi|29631918|gb|CB636927.1|CB636927
EST:     GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGAC                         ATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
genomic: GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGACgtccgtgaca ... ttgcatgcagATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
EST: gi|88394904|gb|CI607631.1|CI607631
EST:     GCGGCCTCAACTCCCCGCTCCAATTCGCCGCCGCTAAGGGCCACCTCGAC                         ATTGTGACGCTGTTGCTGGAGAAGGG-GCGGATGTGAAGGTACGGAA
genomic: GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGACgtccgtgaca ... ttgcatgcagATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAA
EST: gi|88385475|gb|CI564135.1|CI564135
EST:     GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGAC                         ATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
genomic: GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGACgtccgtgaca ... ttgcatgcagATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
EST: gi|88310409|gb|CI659199.1|CI659199
EST:     GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCANCTCGAC                         ATTGTGACGCTGTTGCTG
genomic: GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGACgtccgtgaca ... ttgcatgcagATTGTGACGCTGTTGCTG
EST: gi|29645490|gb|CB650497.1|CB650497
EST:     GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGAC                         ATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
genomic: GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGACgtccgtgaca ... ttgcatgcagATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
EST: gi|88299379|gb|CI572331.1|CI572331
EST:     GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGAC                         ATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
genomic: GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGACgtccgtgaca ... ttgcatgcagATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
EST: gi|86909776|gb|CI304752.1|CI304752
EST:     GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGAC                         ATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
genomic: GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGACgtccgtgaca ... ttgcatgcagATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
EST: gi|88314988|gb|CI610047.1|CI610047
EST:     GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGAC                         ATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
genomic: GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGACgtccgtgaca ... ttgcatgcagATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
EST: gi|29673129|gb|CB669404.1|CB669404
EST:     GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGAC                         ATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
genomic: GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGACgtccgtgaca ... ttgcatgcagATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
EST: gi|29632141|gb|CB637150.1|CB637150
EST:     GCCACCTCGAC                         ATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
genomic: GCCACCTCGACgtccgtgaca ... ttgcatgcagATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
EST: gi|88424663|gb|CI606462.1|CI606462
EST:     GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGAA                         ATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAAAGTACGGAACTAC
genomic: GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGACgtccgtgaca ... ttgcatgcagATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
EST: gi|88351478|gb|CI627494.1|CI627494
EST:     GCGGCCTCAACTCCCCGCTC-ACTTCGCCGCCGCTAAGGGCCACCTCGAC                         ATTGTGACGCTGTTGCTGGAGAAGGG
genomic: GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGACgtccgtgaca ... ttgcatgcagATTGTGACGCTGTTGCTGGAGAAGGG
EST: gi|29641797|gb|CB646804.1|CB646804
EST:     GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGAC                         ATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
genomic: GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGACgtccgtgaca ... ttgcatgcagATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
EST: gi|88426126|gb|CI574009.1|CI574009
EST:     GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGAC                         ATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
genomic: GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGACgtccgtgaca ... ttgcatgcagATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
EST: gi|88299309|gb|CI572261.1|CI572261
EST:     GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGAC                         ATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
genomic: GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGACgtccgtgaca ... ttgcatgcagATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
EST: gi|29628246|gb|CB633257.1|CB633257
EST:     GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGAC                         ATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
genomic: GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGACgtccgtgaca ... ttgcatgcagATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
EST: gi|88352087|gb|CI626087.1|CI626087
EST:     CGGCCTCAACTCCCCGCCTCCACTTCGCCGCCGCTAAGGGCCACCTCGAC                         ATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
genomic: CGGCCTCAACTCCCCGC-TCCACTTCGCCGCCGCTAAGGGCCACCTCGACgtccgtgaca ... ttgcatgcagATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
EST: gi|29673087|gb|CB669362.1|CB669362
EST:     GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGAC                         ATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
genomic: GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGACgtccgtgaca ... ttgcatgcagATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
EST: gi|29644924|gb|CB649931.1|CB649931
EST:     GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGAC                         ATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
genomic: GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGACgtccgtgaca ... ttgcatgcagATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
EST: gi|88569846|gb|CI661021.1|CI661021
EST:     GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGAC                         ATTGTGACGCTGTTGCTGGAGAAGGGC
genomic: GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGACgtccgtgaca ... ttgcatgcagATTGTGACGCTGTTGCTGGAGAAGGGC
EST: gi|29631475|gb|CB636484.1|CB636484
EST:     GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGGTAAGGGCCACCTCGAC                         ATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC
genomic: GCGGCCTCAACTCCCCGCTCCACTTCGCCGCCGCTAAGGGCCACCTCGACgtccgtgaca ... ttgcatgcagATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTAC