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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCGGTTCATCAGGGTCTTCTGGGAATGTGGCGAACTACATGGGTCAGATGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatcttcaccttctaagtgtcatcgttcttctgcctgacaacatggatttattaactggtgattcgtgtcagatgtcgcctttgcagtgattaaagcttagattttgactattcttttggtttcatttttgtcag

Basic information

species Oryza sativa
transcript LOC_Os07g48820.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g48820.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G361847_T04 (Zea mays), 5'ss of exon 9
TCTCGGTTCATCAGGGTCTTCTGGGAATGTGGCGAACTACATGGGTCAGATGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatcttcaccttctaagtgtcatcgttcttctgc-ctgacaacatggatttattaactggtgattcgtgtcagatgtcgcctttgcagtgattaaagcttagattttgactattcttttggtttcatttttgtcag
||||||| || |||| ||||| || |||||||| |||||||||||||||||||| ||||||||||| ||||| || ||||| |||||||| ||| |||| | ||| ||||  || ||    || || | ||    | |  |||   |  ||| |||  |   |   | ||||  | ||   |    |||    |   |  ||                                       
TCTCGGTCCAGCAGGTTCTTCAGGAAATGTGGCAAACTACATGGGTCAGATGGCCATGGCCATGGGCAAACTCGGGACGCTAGAGAATTTTCTTCGCCAAgtaagcatct--acttt----gtatctttgtggggcggtactgtttatttggttttgctgcataa-gtttcgaat-agtaattatgttttatttatatgcag---------------------------------------

upper sequence: LOC_Os07g48820.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA20G39050.1 (Glycine max), 5'ss of exon 11
TCTCGGTTCATCAGGGTCTTCTGGGAATGTGGCGAACTACATGGGTCAGATGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatcttcaccttctaagt--gtcatc------gttc-ttctgcctgacaacatggatttattaactggtgattcgtgtcagat-gtcgcctttgca----gtgattaaagc--ttagattttgactattcttttggtttcatttttgtcag
 || || || || || || || || |||||||| || ||||||||||| ||||| |||||||||||||||||||| || || |||   ||| ||   |||| ||   | |    ||   | ||  |  |||      |||| || | |   |  | |  | | | | |    |   ||| || |||||  | |   |   |       ||||||     |    | ||   ||| || ||||      ||||  ||
ACTTGGCTCCTCTGGTTCATCAGGCAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAACTAGGGACACTTGAGGGGTTCATTAAGCAGgtaaacttttcttactcacatgtacgcgatcagtttggttcatttttctcaaagaaaatgctctttcatacagcatttcatggcagattattgatatcaaacatcactattaaaataacttagctctgttcatttttgtggtggt-catttgaaag

upper sequence: LOC_Os07g48820.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA10G44270.1 (Glycine max), 5'ss of exon 9
TCTCGGTTCATCAGGGTCTTCTGGGAATGTGGCGAACTACATGGGTCAGATGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatcttcaccttctaagtgtc--atcgttcttctgcctg-------acaacatggatttattaactggtgattcgtgtcagatgtcgcctttgcagtgattaaagcttagat--tttgactattcttttggtttcatttttgtcag--
 || || || || || || || || |||||||| || ||||||||||| ||||| |||||||||||||||||||| || || |||   ||| ||   |||| | |  | |    ||   | ||||   |||  | |  | | |        |  | |  | | | | |    |   ||| || ||||| |     |  ||   || |    | | ||   ||| || |  || |  ||    |  | | |   
ACTTGGCTCCTCTGGTTCATCAGGCAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAACTAGGGACACTTGAGGGATTCATTAAGCAGgtatgcttttcttactcacatgtgtgcgatcagtttggtacatatttctcaaagaaaatgctctttcatacagcatttcatggcagat-tattgataacaaacatcactattaaaataacttggctctgtttatttttgtggtcatttgaaag

upper sequence: LOC_Os07g48820.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA13G26280.1 (Glycine max), 5'ss of exon 11
TCTCGGTTCATCAGGGTCTTCTGGGAATGTGGCGAACTACATGGGTCAGATGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatcttcaccttctaagtgtcatcgttcttctgcctgacaacatggatttattaactggtgattcgtgtcagatgtcgcctttgcagtgattaaagcttagattttgactattcttttggtttcatttttgtcag
 |  |  ||||| || || || ||||||||||| |  ||||||||||| ||||| ||||||||||| || ||||| || || ||    ||| ||   |||| |  |        |||||     |  | |  ||| |   || ||| |  | ||  |  | | |||| | | || ||     | ||||    |  |  |  |||   ||   | |||| ||                   
ACCTGCCTCATCTGGTTCATCAGGGAATGTGGCAAGTTACATGGGTCAAATGGCCATGGCCATGGGCAAGCTAGGGACACTAGAAGGGTTCATTCAACAGgtacat-------tcttct-----ttgttgcacttgta--tgccaata--gtttgctgcattagtgaatag-gtgaggacgagtcttt----tagtccagccttgatttcctaatattatt-------------------

upper sequence: LOC_Os07g48820.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA15G37220.1 (Glycine max), 5'ss of exon 7
TCTCGGTTCATCAGGGTCTTCTGGGAATGTGGCGAACTACATGGGTCAGATGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatcttcaccttctaagtgtcatcgttcttctgcctgacaacatggatttattaactggtgattcgtgtcagatgtcgcctttgcagtgattaaagcttagattttgactattcttttggtttcatttttgtcag
 |  |  ||||| || || || ||||||||||| || ||||||||||| ||||| |||||||||||||| ||||| || || ||    ||| ||   |||    |||  ||   |||          | |  ||| |     |||| || | ||  |  | |||||| |   || |        ||||    |  |  |  |||   ||   | |||| ||                   
ACCTGCCTCATCTGGTTCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCCATGGCCATGGGTAAGCTAGGGACACTTGAAGGGTTCATTCAACAG-

upper sequence: LOC_Os07g48820.2 (Oryza sativa), 5'ss of exon 9
lower sequence: AT3G12250.5 (Arabidopsis thaliana), 5'ss of exon 9
---TCTCGGTTCATCAGGGTCTTCTGGGAATGTGGCGAACTACATGGGTCAGATGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatcttcaccttctaagtgtcatcgttcttctgcctgacaacatggatttattaactggtgattcgtgtcagatgtcgcctttgcagtgattaaagcttagattttgactattcttttggtttcatttttgtcag
   ||| ||||   |  | || || |  ||||| |||| |||||||||||||||||| ||||| |||||  |  |||| || |||||    ||| |  |||||| |          | ||  || |||    ||| |   |    | | |||  || | || |  |       | |  | || |    |||  |   || ||  | |   || ||    |  |   |  ||  ||  || |||
AACTCTTGGTT---CCAGTTCATCGGATAATGTCGCGAGCTACATGGGTCAGATGGCCATGGCAATGGGGCAGTTAGGCACCCTCGAAGGATTCATACGCCAGgta----------ctttagaaatgtggatgttatcgagat--ataccat--atcttttcatcgtcacaaagagataaatattttattt-tatatatgaatccgtctgttatggagttcatagggcatttcttggtggcag

upper sequence: LOC_Os07g48820.2 (Oryza sativa), 5'ss of exon 9
lower sequence: Vv13s0084g00660.t01 (Vitis vinifera), 5'ss of exon 11
TCTCGGTTCATCAGGGTCTTCTGGGAATGTGGCGAACTACATGGGTCAGATGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatcttcaccttctaagtgtcatcgttcttctgcctgacaacatggatttattaactggtgattcgtgtcagatgtcgcctttgcagtgattaaagcttagattttgactattcttttggtttcatttttgtcag
||| || || || || || ||||| |||||||| ||||| |||||||| ||||| ||||||||||| || || || || || |||   ||  || | |||| |          ||||||||  ||  |  || |  | |||||||| | | ||     || |  |||| | | | |      |  | ||         ||  ||||    ||                            
TCTTGGCTCTTCTGGTTCATCTGGAAATGTGGCAAACTATATGGGTCAAATGGCCATGGCCATGGGAAAGCTGGGGACTCTTGAGGGGTTTATTCGTCAGgta--------ttccttctaaa-gttttgattttctttcctgacaataagaat----aaaatcttgat-catattatggtctgtttatgatcaaccagaaagttaggaaatgga--------------------------

upper sequence: LOC_Os07g48820.2 (Oryza sativa), 5'ss of exon 9
lower sequence: Vv08s0007g05170.t01 (Vitis vinifera), 5'ss of exon 10
TCTCGGTTCATCAGGGTCTTCTGGGAATGTGGCGAACTACATGGGTCAGATGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatcttcaccttctaagtgtcatcgttcttctgcctgacaacatggatttattaactggtgattcgtgtcagatgtcgcctttgcagtgattaaagcttagattttgactattcttttggtttcatttttgtcag
 |  ||  |||| || || || ||||||||||| ||||| ||||| |||||||| ||||| |||||||| ||||| || || |||   || ||| | |||| ||    | |     | ||   ||    ||| |   |  ||| ||| || ||  || | | |     | ||| || ||       ||      ||| |   || | | |  |                           
ACCTGGCCCATCTGGATCATCAGGGAATGTGGCAAACTATATGGGCCAGATGGCCATGGCAATGGGTAAGCTAGGGACTCTTGAGGGATTTCTTCGTCAGgtaatctcccttttagttta---gtggaagttgtaaggaatgaaaacttgaatgcatcagcag-----tggtggcaaataaaattattt-----atttattttttgctatcaa---------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88509942|gb|CI437448.1|CI437448
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|88509492|gb|CI436998.1|CI436998
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|88274862|gb|CI388320.1|CI388320
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|86427971|gb|CI073068.1|CI073068
EST:     AACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: AACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|88556433|gb|CI486760.1|CI486760
EST:     GCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: GCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|86429351|gb|CI076032.1|CI076032
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|86861266|gb|CI328062.1|CI328062
EST:     TCGAGAATTTCC-TTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|29662494|gb|CB658769.1|CB658769
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|86841801|gb|CI337455.1|CI337455
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|86431574|gb|CI085185.1|CI085185
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|88556090|gb|CI486397.1|CI486397
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|29671725|gb|CB668000.1|CB668000
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAAGGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|87036046|gb|CI189493.1|CI189493
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|29671830|gb|CB668105.1|CB668105
EST:     CGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: CGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|86418920|gb|CI053721.1|CI053721
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|88446355|gb|CI563185.1|CI563185
EST:     CCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: CCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|18386670|gb|BM419868.1|BM419868
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|89186571|gb|CI048243.1|CI048243
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|86429640|gb|CI076321.1|CI076321
EST:     ACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: ACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|29639368|gb|CB644377.1|CB644377
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|86425280|gb|CI070377.1|CI070377
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|88553547|gb|CI483665.1|CI483665
EST:     GTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: GTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|88283259|gb|CI404705.1|CI404705
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|88221648|gb|CI221604.1|CI221604
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|29659082|gb|CB655357.1|CB655357
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTTTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|88546517|gb|CI476161.1|CI476161
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|88486719|gb|CI423990.1|CI423990
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|88367066|gb|CI561628.1|CI561628
EST:     GGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: GGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|88521118|gb|CI448777.1|CI448777
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|86412621|gb|CI067026.1|CI067026
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|88964199|gb|CI045392.1|CI045392
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|88533782|gb|CI460447.1|CI460447
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|88517195|gb|CI444764.1|CI444764
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|88513362|gb|CI440868.1|CI440868
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|88532131|gb|CI461594.1|CI461594
EST:     CAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: CAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|29680497|gb|CB676772.1|CB676772
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|29625343|gb|CB630354.1|CB630354
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|86425497|gb|CI070594.1|CI070594
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
EST: gi|86427334|gb|CI072431.1|CI072431
EST:     TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAG                         GCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG
genomic: TGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 75 (downstream exon)
Score: 30

TCTCGGTTCATCAGGGTCTTCTGGGAATGTGGCGAACTACATGGGTCAGATGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatct ... tttttgtcagGCGGACAACCTGCGACAGCAGACATTGCATCAAATGCAACGAATTCTGACGATCCGGCAAGCCTCGCGTGCTCTTCTTGCCATACACGATTACTTTTCAC




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